Comments (3)
Hi, thank you for reaching out. I am having trouble reproducing this error (see this Colab notebook). Could you please update pandas (pip install -U pandas
) and try again?
from gget.
Hi,thaks for your timely assistant.After running "pip install -U pandas" ,it still didn't work.But after rerunning "gget setup elm",everything goes well.Wishing you a pleasant and joyful work and life!
from gget.
Ok, maybe something went wrong the first time the database was downloaded. Iām glad it works now. Please let me know if you encounter any other issues in the future. Happy holidays! :)
from gget.
Related Issues (20)
- Rewrite gget BLAST to use BLAST+ instead of deprecated NCBI server
- Invalid command line Expected -option_name or --option_name, got '-' using gget muscle HOT 6
- Request addition of Open Targets API
- Multiple sequence alignment for multiple species HOT 10
- gget seq encounters missing gene name from uniprot and throws type error HOT 2
- gget.cellxgene TileDBError error when trying to return anndata HOT 4
- Add module to COSMIC database
- Add module for reactome
- Module to download MitoCarta3 database
- Is it possible to get all ELM's using gget? HOT 4
- Add module to depmap database HOT 1
- gget blast can not restrict by taxonomy
- GENCODE GTFs+FASTAs
- cellxgene filter improvements HOT 1
- gget blast sequence needs to be capitalized for automatic recognition of nucleotide/amino acid seq HOT 1
- Request addition of Eukaryotic Linear Motif database HOT 1
- Specify version in ensembl "search" module HOT 2
- expand gget search to include synonym hits in addition to name and description hits HOT 4
- gget pdb error in python HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
š Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ššš
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ā¤ļø Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from gget.