Comments (2)
Hello,
HiPhase looks for the sample name in the VCF and the BAM file to match. It sounds like you know they mismatch, so I would recommend making them match and retrying it.
Matt
from hiphase.
Closing this for now, but feel free to reopen if that did not resolve the issue you're experiencing.
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Related Issues (20)
- Encountered max_edit_distance check HOT 6
- Recommendations for input vcf HOT 3
- A question about HP tag HOT 6
- reference letter case issue HOT 2
- Feature request: haplotag in phased VCF files HOT 2
- Running HiPhase with tumor-normal pair HOT 2
- Error while parsing VCF file: FORMAT columns HOT 3
- Expected memory usage HOT 3
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- Normalization of INDELs: required or should be avoided HOT 3
- [Suggestion] reducing messages to STDOUT to speed up the utility HOT 3
- [Question] information in the filter column of vcfs HOT 2
- [Question] Phasing of rs36056539 in NA19226 HOT 3
- possibility to utilize information from phased bam files HOT 4
- thread 'main' panicked error HOT 3
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- can the three output vcf directly concatenate? HOT 2
- Inconsistent Haplotype HOT 4
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