pakanlab Goto Github PK
Name: PakanLab
Type: Organization
PakanLab's Projects
allenccf
Tools to work with Allen Inst CCF data in matlab
brainreg
Automated 3D brain registration with support for multiple species and atlases.
cebra
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
cellfinder
Automated 3D cell detection and registration of whole-brain images
deeplabcut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
denerd
High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning
fissa
A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
henschke_et_al_cellcalcium2021
Julia U. Henschke, Alan T. Price and Janelle M.P. Pakan. Cell Calcium 2021
henschke_et_al_currbiology2020
Henschke*, Dylda*, Katsanevaki*, Dupuy, Currie, Amvrosiadis, Pakan* and Rochefort*. Current Biology, 2020.
histology
Histology processing
ic-imaging-control-samples
Windows Sample in C#, C++, Python, LabVIEW and Java
suite2p
cell detection in calcium imaging recordings
vame
Variational Animal Motion Embedding
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