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aav_fitness_landscape

Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"

alphafold

Open source code for AlphaFold.

arriba

Fast and accurate gene fusion detection from RNA-Seq data

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-nextflow

A curated list of nextflow based pipelines

bamdst

a lightweight bam file depth statistical tool

bcellmagic

B and T cell repertoire sequencing analysis pipeline using the Immcantation framework

biobakery

bioBakery tools for meta'omic profiling

bioinfo-notebook

🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

bioinformatics_toolbox

This repo contains Bosh's personal bioinformatics tools with detailed comments.

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

cancer-vaccine-pipeline

Constructing Neoantigen Vaccine Pipeline with pVACtools

cfdnapipe

cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data

cfmbd-seq-clinical

codecsuite

analysis pipeline for CODEC data

codon_tools

AA reverse translation and DNA optimization tool

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

diana-map

DIANA-mAP is an automated microRNA analysis pipeline with an emphasis on pre-processing.

docs

Documentation of the Snakemake-Workflows project

flair

Full-Length Alternative Isoform analysis of RNA

flex_ddg_tutorial

fluffy

FetaL AneUploidy and FetalFraction analYsis Pipeline

fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

gallery

Gallery of ggplot2 extensions

gatb-minia-pipeline

GATB Minia assembly pipeline

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

gganatogram

Create anatograms using ggplot2

ggerr

Adding errorbars to ggplots

ggplot2

An implementation of the Grammar of Graphics in R

ggprism

ggplot2 extension inspired by GraphPad Prism