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alphafold

Open source code for AlphaFold.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bam2fastq

Simple convertor from bam to FASTQ

bayestab

this is the BateStab program

biobakery

bioBakery tools for meta'omic profiling

canu

A single molecule sequence assembler for genomes large and small.

data

easyfig-1

Development version of Easyfig

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

fastani

Fast Whole-Genome Similarity (ANI) Estimation

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

flask_progress

flask_progress

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

iqtree2

NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

jd_seckill

京东秒杀商品抢购

kraken2

The second version of the Kraken taxonomic sequence classification system

lefse

longitudinal_microbiome_data_analysis

medusagraph

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

microbiomestatplot

Interpretation and visualization of microbiome charts

ngs_data_processing

Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

outcrossseq

paddleseg

End-to-end image segmentation kit based on PaddlePaddle.

picrust2

Code, unit tests, and tutorials for running PICRUSt2

prodigal

Prodigal Gene Prediction Software

quast

Genome assembly evaluation tool

spades

SPAdes Genome Assembler

sra-tools

SRA Tools

transfer.sh

Easy and fast file sharing from the command-line.