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bigbed-jaccard

A tool to approximate the Jaccard similarity of bigBed files from functional genomic datasets

chipseq-visualization

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

csp

Communicating sequential processes in Go. Solutions to problems posited by C.A.R. Hoare in Communicating Sequntial Processes

demo-pipeline

Bioinformatics pipeline examples on Kubernetes using Argo and Kubeflow Pipelines

fragment

gembs-to-bismark-bed-converter

giftbox

google-dark-theme

A dark theme for Google based on YouTube's dark theme

graphql-python

interpretation_samples

Interpretation code for samples

lsh-rs

Locality Sensitive Hashing in Rust with Python bindings

miniwdl

Workflow Description Language developer tools & local runner

paul-sud.github.io

GitHub pages

pre-commit-jsonnetfmt

pre-commit hook for jsonnetfmt

pubmed-es

Index Pubmed into Elasticsearch

python-ts-graphql-demo

Demo project to demonstrate how an asyncio Python project with SQLAlchemy and Strawberry can have a great typed DX on the frontend via codegen and TypeScript React hooks.

resorepo

REcursively Search On REmote rePOsitory

s3-md5

Compute md5 checksums of s3 objects

snoberry

SnoVault + Strawberry = Snoberry

strawberry

A new GraphQL library for Python 🍓

sublimelinter-template

A template for new linter plugins

tiledb-experiments

Experiments with TileDB for genomics applications