Related Issues (20)
- Add method selection for GSEA-like algorithm in GUI HOT 1
- ROSE genome options
- Normalization
- Save alignment statistics - Bowtie2
- Lineplots of normalized counts
- Improve tool implementation in report
- MAGeCK design matrix verification
- Pipeline don't run in "non-genes" mode
- Hardcoded cut-off HOT 2
- Test with negative control sg/shRNA file
- Form validation
- Control pipeline execution HOT 1
- Add fold-change(s) column to BAGEL BF output
- Add a unidirectional column for uncertainty to in-house method
- Show both union and intersection in report
- Plot RRA score instead of fold-change
- Apply only FDR cut-off in the integration module
- Add a numerical suffix to token if it alreay exists HOT 1
- Run PitViper with subprocess
- Add messages in rules definition for a better data lineage
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