paulbarber Goto Github PK

attiny85_raspberrypi

Code for the ATtiny85 and for programming via the Raspberry Pi

canarycaredataanalysis

Some R code to analyse data from a Canary Care home monitoring system

christmascountdown

coinpaperfigures

R Code used to generate the figures for the COIN paper (2019)

cytopb

For multiplexed imaging (IF, IMC, ...), use of overlap signals to generate cell type maps and interaction signatures.

flim-cuda-primatives

Operations on fluorescence lifetime imaging (FLIM) data performed on a GPU using CUDA.

genefu

R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.

horse_game

Horse Race Betting Game in Python 3

image-segmentation-keras

Implementation of Segnet, FCN, UNet and other models in Keras.

imagej.github.io

GitHub Pages for ImageJ

imcpluginscp

CellProfiler plugins for multiplexed image analysis

imcsegmentationpipeline

A pixelclassification based multiplexed image segmentation pipeline

imctools

Tools to handle IMC data

jooh.github.io

website

libics

Image Cytometry Standard file reading and writing.

libicsr

Use of the libics library from R.

marker_distribution

“Novel Marker Distribution Pipeline for Analysis of Cell Based Quantitative Spatial Information”. The aim of this research was to analyse quantitative spatial information and provide intuitive visualisation relating to the identification of cells relative to tissue structure and pathology such as cancer tumour.

msawrapper

This package unifies the exploration and use of multivariate survival analysis methods for time to event and ordinal class data.

raspi-gpio

Py scripts from my Raspberry Pi to do stuff via the GPIO

synergyfinder