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Paul Tang's Projects

algoland icon algoland

Compedium of algorithms, from basic to advanced, including machine learning.

blogprogs icon blogprogs

Code and Jupyter Notebooks corresponding to blog posts.

dcnet icon dcnet

DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG

infinite-hmm icon infinite-hmm

Proof-of-concept implementation of an Infinite Hidden Markov Model.

mnist_mpi icon mnist_mpi

Proof-of-concept, MPI-based distributed training of a neural network on SGE HPCs.

na12878 icon na12878

Data and analysis for NA12878 genome on nanopore

nice_pytorch icon nice_pytorch

Nonlinear Independent Components Estimation (Dinh et al, 2014) in PyTorch.

polya_analysis icon polya_analysis

Analysis pipeline of poly(A) tails lengths from ONT poly(A) standards dataset. Accompanies our forthcoming publication.

quantization icon quantization

Work-in-progress book on theory of geometric quantization. (Temporarily abandoned with plans to finish in the future.)

rawctcnet icon rawctcnet

Deep convolutional basecaller trained with CTC loss.

torch-crf icon torch-crf

Linear-chain LSTM-CRFs and Convolutional CRFs in PyTorch.

vault-tec icon vault-tec

Prototype implementation of fuzzy vault cryptosystem in MATLAB.

wavenet-speech icon wavenet-speech

Implementation of Google Deepmind's WaveNet for speech recognition in PyTorch.

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