Pavlo Hrab's Projects
A stream processor for mundane tasks written in Go
BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.
Example of network testing
Example project for coderefinery documentation lesson
A complete computer science study plan to become a software engineer.
The Leek group guide to data sharing
š A magical documentation site generator.
Exercise of the CodeRefinery course eScience center
A robot powered training repository :robot:
Day 2 of CodeRefinery
hrmR is a shiny app for HRM analysis, using RFU data. The app is tested for Cfx96 data, but any data should suffice, as long as the format is the same. Besides different plots, the app has also comprehensive clustering options.
Some code to accompany my Master Thesis. Mostly some scripts in python and R
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Obsidian.md integrates with Zotero, create literature notes and insert citations from a Zotero library.
A small collection of one-liners in a one bash script for fasta files processing.
Repository for Programming Assignment 2 for R Programming on Coursera
R package implementation of ReMIXTURE
Small telegram bot to send notes into RemNote daily document.
rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within a set of 16S rRNA as a measure of variability between them