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adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

amazon-sagemaker-examples

Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker

atlantis-example

A simple terraform project to use along with atlantis bootstrap mode

b-leader

HLA-B Leader Peptide Microservice and Tool

black

The uncompromising Python code formatter

chipper

Fast proteasomal cleavage detection. Apache-licensed.

ciwd

CIWD data in computable form

codebuild-test

Repo to test codebuild

control-repo

Puppet test

course-dbt

Analytics engineering with dbt - projects and developer environment

covid-19-data

An ongoing repository of data on coronavirus cases and deaths in the U.S.

covid-sanity

Aspires to help the influx of bioRxiv / medRxiv papers on COVID-19

cython_example

Cython Example

d3-for-the-impatient

Examples and code for the book "D3 for the Impatient"

developer-resources

neo4j developer resources

devopsinthecloud

docker-hail

Dockerized Hail with examples for local install

dotfiles

Dot Files

ecs-demo-php-simple-app

A simple PHP sample application http://aws.amazon.com/ecs

emr-ec2-cost-calculator

This project is written in python. It calculates the EMR cluster cost by getting the spot and ondemand prices of the instances and adding up the emr charges.

gfe

Gene Feature Enumeration for polymorphic genes

gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE

gfe-service

GFE Webservice: Provides REST endpoints to GFE related functions

gfe-service-2.0

GFE Service for GFEDB 2.0

ghactions

ghactions

github-workshop

GitHub Workshop, Biox Team

gl-lint

GL String Linter

gl-tools

GL String Tools

graph-measures

Topological feature calculators infrastructure.

grimm

GRIMM: Graph IMputation and Matching for HLA Genotypes