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automl_benchmark

Benchmarking auto-ML frameworks.

cytodata-hackathon-base

diane

A personal assistant in my bedroom.

learning-git

Repo to learn how to git

mpcmf

Package for a generative model for scRNA-seq data.

noc-examples-p5.js

Port to p5.js of Nature of Code examples

pangolin

BSSE COVID-19 sequencing of test swab samples

pedrofale.github.io

rci-reliable-message-board

Project for the Computer Networks course at IST, Lisbon during the summer semester of 2016/17.

ridge_map

Ridge plots of ridges

rnn-forecaster-plugin

A plugin for Pentaho's Kettle which allows users to make data forecasts based on Recurrent Neural Network models trained on Weka using the wekaDeeplearning4j package. Code based on the Weka Scoring plugin by Mark Hall.

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scrnaseq_benchmarking

Package to reproduce results in my MSc Thesis.

scvi

A deep generative model for gene expression profiles from single-cell RNA sequencing

simple-pca

A script to test PCA on simple problems

spoon-knife

This repo is for demonstration purposes only.

thesis-code

Scripts to test models relevant to my MSc Thesis on Machine Learning for Genomic Medicine

timeseriesforecasting

Weka's Time Series Forecasting package by Mark Hall.

tumorevo

Simulate and illustrate tumor evolution.

vbpi-nf

Code for improved variational Bayesian phylogenetic inference with normalizing flows

wekadeeplearning4j

Weka DL4J. Original code by Mark Hall

zinbayes

A Bayesian model for scRNA-seq data.