Giter Site home page Giter Site logo

Pedro G. Nachtigall, Ph.D.

Bioinformatics || Evolution || Genetics

About me

I like to design novel tools and integrate available approaches to convert data into biological knowledge. I consider myself a computational biologist with high enthusiasm of using and integrating novel technologies to study evolution, ecology, and genetics. Currently, I am using high-throughput sequencing methodologies to better understand venom evolution in snakes.

I have 10+ years of experience in bioinformatics, statistics, programming, software engineering, pipeline development, and high-throughput sequencing data analysis. I have a wide experience in a variety of 'omic' data (genomics, epigenomics, transcriptomics, and proteomics) generated by short- and/or long-reads methodologies.

lattes orcid sg rg

Repositories

Find below a list of the repositories containing tools, scripts, tutorials, and guides that I've been developed so far.

Tools

Bioinformatics tutorials/guides

Contact

📫 [email protected]

pedronachtigall's Projects

chimerakiller icon chimerakiller

In-development script for identifying chimeric transcripts in a de novo assembled transcriptome

codan icon codan

CDS prediction in transcripts

flair icon flair

Full-Length Alternative Isoform analysis of RNA

gis_tutorial icon gis_tutorial

The basics of GIS, qGIS, and R with tips, tricks, and resources

mitosis icon mitosis

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

repeat-annotation-pipeline icon repeat-annotation-pipeline

Bioinformatics pipeline and tutorial for performing repeat annotation in genome assemblies using RepeatModeler and RepeatMasker.

snx-vpn-docker icon snx-vpn-docker

Repository to install a docker container to use vpn through snx

terl icon terl

Transposable Elements Representation Learner (TERL)

toxcodan icon toxcodan

Toxin genes annotation in venom gland transcriptome assembly

toxcodangenomefigures icon toxcodangenomefigures

Repository containing the input files and code to generate the figures in ToxCodAn-Genome manuscript.

utran icon utran

UTR annotation of de novo assembled transcripts

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.