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assmpipe

Pipeline for genome assembly

bak_spotsv

bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

bioconda-recipes

Conda recipes for the bioconda channel.

biopipe

chinsequartetgenome

cluster

Instructions of HPC at Ye-lab

complete-striped-smith-waterman-library

discvrseq

A collection of command line tools for working with sequencing data

dna-seq-analysis

DNA sequencing analysis notes from Ming Tang

edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

eklipse

a tool for predicting mitochondrial DNA deletions using soft-clipping

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

font

gapless

Pipeline for assemblies merging

giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.

github-chinese-top-charts

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haptr

hpp_year1_assemblies

Assemblies from HPP Year 1 production

igv-reports

Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.

mantis

Microsatellite Analysis for Normal-Tumor InStability

merd

Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads

minineedle

Needleman-Wunsch and Smith-Waterman algorithms in python

mosaic

MicrOSAtellite Instability Classifier

mshunter

Microsatellite genotyping

msidata

msihunter

A microsatellite instability analysis tools using NGS data

msisensor

microsatellite instability detection using tumor only or paired tumor-normal data

msisensor-pro

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

msisensor-rna

MSIRNA: Microsatellite instability detection using RNA sequencing data