Name: Portable Encapsulated Projects
Type: Organization
Bio: Standardized sample metadata structure for biological research
Blog: https://pep.databio.org
attmap
Key-value mapping that supports nested attribute-style access
biocproject
BiocProject provides a PEP-compatible R package for autoloading biological data
caravel
A web GUI for pipeline job submission and management
divcfg
DIvvy computing configuration files.
divvy
Standardized computing resource configuration
eido
Validator for PEP objects
example-pephub-cli
example-pephub-spa
example_peps
Some simple examples of PEP-compatible projects
geofetch
Builds a PEP from SRA or GEO accessions
geopephub
Automatic uploader of GEO metadata to PEPhub.
hello_looper
A Hello World! example repository for looper
looper
A job submitter for Portable Encapsulated Projects
nf-core-pep
ngstk
Next-generation sequencing toolkit
pep-cwl
pep-nextflow
pep-pipelines
Examples of how to use PEP to run pipelines with different workflow systems
pep-snakemake
Example simple and bioinformatic pipelines using PEPs and snakemake.
pepconvert
Convert PEP metadata into other formats
pepdbagent
Database for storing sample metadata
pepembed
pephub
A web API and database for biological sample metadata
pephub-ui
pephub.databio.org
Data stores for pephub PEPs
pephubclient
A tool to provide Python and CLI interface and Python API for PEPhub.
pephubgen
Static file generator for reading in a PEP storage URL and generating a static file structure to traverse and fetch relevant data on the PEP
pepingester
pepjava
pepkit
Meta-package for all pepkit tools
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
