perezrathke Goto Github PK

amazoncommentminer

beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

bindinginteraction

boost.simd

Portable SIMD computation library - To be proposed as a Boost library

bumps

Data fitting with uncertainty analysis

croaring

Roaring bitmaps in C (and C++)

cs.uic.thesis.template

fastbook

The fastai book, published as Jupyter Notebooks

grails-core

The Grails Web Application Framework

jarad.github.com

Github userpage

minicsv

Automatically exported from code.google.com/p/minicsv

ms-gsp

MS-GSP implementation for CS 583 at UIC

neofox

Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descriptors

neofuse

NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.

ompg-public

Loop simulations for Outer Membrane Protein G

plyrmr

provis

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."

pyemd

Fast EMD for Python: a wrapper for Pele and Werman's C++ implementation of the Earth Mover's Distance metric

ravro

rbm-mhc

Python3 script to implement RBM-MHC - a predictor for class I antigen presentation - described in Bravi et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.04.25.061069v1)

rhadoop

RHadoop

rhbase

A package that allows R developers to use Hadoop HBase

rhdfs

A package that allows R developers to use Hadoop HDFS

rmr2

A package that allows R developer to use Hadoop MapReduce

seqdesign

Protein design and variant prediction using autoregressive generative models

sparsepp

A fast, memory efficient hash map for C++

tcr_classifier

Predicting T Cell Receptor Specificity with Deep Learning

tcrdock

python tools for TCR:peptide-MHC modeling and analysis

titan

T Cell Receptor Specificity Prediction with Bimodal Attention Networks

tracer