Comments (6)
do we want to also check this with the SBML model? Meaning that all parameters defined in the SBML are present in the parameter sheet?
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All besides the ones appearing as column names in the condition table, yes.
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Added first part. Check for parameter overrides from measurement table still missing.
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@dweindl has this been addressed sufficiently?
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@dweindl has this been addressed sufficiently?
No, at least not by me or by any commit referencing this issue.
What needs to be checked here is that all parameters introduced in the condition table (as value, not column - i.e. parameter overrides) are present in the parameter table.
from petab.
See also LeonardSchmiester/Benchmark-Models#4 (comment). This is not sufficiently checked yet
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Related Issues (20)
- Change main branch name "master"->"main" HOT 2
- Condition table not specified for parameters governed by rate rules HOT 3
- Support time dependent changes in conditions HOT 3
- Clarification for condition table what happens if a parameter ID is provided as value HOT 1
- Clarification of condition table what happens if NaN is provided as a value
- Allow using observables in noiseFormula HOT 2
- Extensions: required/optional HOT 2
- Bounds documentation needs clairification HOT 2
- Specification of model time in observables file unclear HOT 2
- No Noise HOT 13
- Clarification/specification of order of condition changes required HOT 5
- Fix sphinx doc
- Add tool using PEtab
- Time-dependent changes in component values HOT 6
- PEtab extension for NLME HOT 15
- Update PETab to be model format agnostic HOT 4
- Allow species in `yValues` of the visualization table HOT 2
- Global vs local SBML parameters HOT 1
- No reference to paper in repository HOT 1
- Update editorial board page
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