peterjc Goto Github PK

2014-12-03-edinburgh

2018-12-10-standrews

Software Carpentry workshop for CRITICAT students at University of St Andrews, 10-11 December 2018

abyss

de novo sequence assembler

astropy

Repository for the Astropy core package

backports.lzma

Backport of Python 3.3's standard library module lzma for LZMA/XY compressed files

bcbb

Useful bioinformatics code, primarily in Python and R

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bgruening_galaxytools

Björn Grüning's Galaxy Tool wrappers (forked for my contributions)

bioarchive.github.io

Reproducibility of Bioconductor package versions in Galaxy

bioconda-docs

Documentation for bioconda

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

bioinformatics

Tools for bioinformatics

biom-format

The Biological Observation Matrix (BIOM) Format Project

bioperl-live

Core BioPerl 1.x code

biopython

My fork of the official Biopython repository, used for experimental branches etc

biopython-feedstock

A conda-smithy repository for biopython.

biopython.github.io

Source of biopython.org website, migrated from MediaWiki

biopython_workshop

A basic introduction to Biopython, intended for a classroom based workshop

bioruby

bioruby

black

The uncompromising Python code formatter

blacken-docs

Run `black` on python code blocks in documentation files

blast_max_target_seqs

Reproducible test case for the "-max_taget_seqs issue" found by Sujai Kumar in Dec 2015.

bosc_materials

Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/

calver

📅 The web's go-to resource for Calendar Versioning info.

caremad.io

My Personal Website

cargo-port

cache packages permanently

ccmcr19_dos

Dos and Don’ts for computational training

ccn

Coupled Cell Networks

checkmydois

Code to check that the DOIs of your own authored research outputs (not just articles!)