Comments (3)
smlmbrt
commented on September 27, 2024
1
We're in the process of cleaning the cohort annotations/duplicates
from pgs_catalog.
ramiromagno
commented on September 27, 2024
1
okay, nice!
Just for completeness:
[[1]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 ESTHER ESTHER Breast Cancer Study
2 ESTHER Epidemiological investigations of the chances of preventing, recognizing early and optimally treating chronic diseases in an elderly…
3 ESTHER ESTHER Breast Cancer Study
Slot "pgs_ids":
# A tibble: 25 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 ESTHER PGS000001 evaluation
2 ESTHER PGS000002 evaluation
3 ESTHER PGS000003 evaluation
4 ESTHER PGS000030 evaluation
5 ESTHER PGS000004 development
6 ESTHER PGS000005 development
7 ESTHER PGS000006 development
8 ESTHER PGS000007 development
9 ESTHER PGS000008 development
10 ESTHER PGS000009 development
11 ESTHER PGS000212 development
12 ESTHER PGS000213 development
13 ESTHER PGS000214 development
14 ESTHER PGS000215 development
15 ESTHER PGS000216 development
16 ESTHER PGS000335 development
17 ESTHER PGS000344 development
18 ESTHER PGS000345 development
19 ESTHER PGS000346 development
20 ESTHER PGS000347 development
21 ESTHER PGS000348 development
22 ESTHER PGS000351 development
23 ESTHER PGS000664 development
24 ESTHER PGS000719 development
25 ESTHER PGS000720 development
[[2]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 DEMOKRITOS UNKNOWN
2 Demokritos Hellenic Cooperative Oncology Group
3 Demokritos Hellenic Cooperative Oncology Group
Slot "pgs_ids":
# A tibble: 15 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 DEMOKRITOS PGS000001 evaluation
2 DEMOKRITOS PGS000002 evaluation
3 DEMOKRITOS PGS000003 evaluation
4 DEMOKRITOS PGS000045 evaluation
5 DEMOKRITOS PGS000046 evaluation
6 DEMOKRITOS PGS000047 evaluation
7 DEMOKRITOS PGS000049 evaluation
8 Demokritos PGS000004 evaluation
9 Demokritos PGS000005 evaluation
10 Demokritos PGS000006 evaluation
11 Demokritos PGS000351 evaluation
12 Demokritos PGS000352 evaluation
13 Demokritos PGS000351 development
14 Demokritos PGS000352 development
15 Demokritos PGS000724 development
[[3]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MDC Malmo Diet and Cancer Study
2 MDC Malmö Diet and Cancer Study
3 MDC Malmo Diet and Cancer Study
Slot "pgs_ids":
# A tibble: 86 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MDC PGS000010 evaluation
2 MDC PGS000011 evaluation
3 MDC PGS000013 evaluation
4 MDC PGS000192 evaluation
5 MDC PGS000217 evaluation
6 MDC PGS000218 evaluation
7 MDC PGS000219 evaluation
8 MDC PGS000220 evaluation
9 MDC PGS000221 evaluation
10 MDC PGS000222 evaluation
11 MDC PGS000223 evaluation
12 MDC PGS000224 evaluation
13 MDC PGS000225 evaluation
14 MDC PGS000226 evaluation
15 MDC PGS000227 evaluation
16 MDC PGS000228 evaluation
17 MDC PGS000229 evaluation
18 MDC PGS000230 evaluation
19 MDC PGS000231 evaluation
20 MDC PGS000232 evaluation
21 MDC PGS000233 evaluation
22 MDC PGS000234 evaluation
23 MDC PGS000235 evaluation
24 MDC PGS000236 evaluation
25 MDC PGS000237 evaluation
26 MDC PGS000238 evaluation
27 MDC PGS000239 evaluation
28 MDC PGS000240 evaluation
29 MDC PGS000241 evaluation
30 MDC PGS000242 evaluation
31 MDC PGS000243 evaluation
32 MDC PGS000244 evaluation
33 MDC PGS000245 evaluation
34 MDC PGS000246 evaluation
35 MDC PGS000247 evaluation
36 MDC PGS000248 evaluation
37 MDC PGS000249 evaluation
38 MDC PGS000250 evaluation
39 MDC PGS000251 evaluation
40 MDC PGS000252 evaluation
# … with 46 more rows
[[4]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 4 x 2
cohort_symbol cohort_name
<chr> <chr>
1 CPCS Copenhagen Prostate Cancer Study
2 CPCS CPCS
3 CPCS Copenhagen Prostate Cancer Study
4 CPCS CPCS
Slot "pgs_ids":
# A tibble: 4 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 CPCS PGS000030 evaluation
2 CPCS PGS000348 development
3 CPCS PGS000351 development
4 CPCS PGS000719 development
[[5]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MCC-SPAIN Multi Case Control Study-Spain
2 MCC-Spain Multi Case Control
3 MCC-Spain Multicase-control study in common tumors in Spain
Slot "pgs_ids":
# A tibble: 3 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MCC-Spain PGS000030 evaluation
2 MCC-Spain PGS000147 evaluation
3 MCC-SPAIN PGS000719 development
[[6]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 PCMUS Prostate Cancer study Medical University Sofia
2 PCMUS PCMUS
3 PCMUS PCMUS
Slot "pgs_ids":
# A tibble: 4 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 PCMUS PGS000030 evaluation
2 PCMUS PGS000348 development
3 PCMUS PGS000351 development
4 PCMUS PGS000719 development
[[7]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 Poland Poland
2 Poland The Poland Group
3 Poland Poland
Slot "pgs_ids":
# A tibble: 4 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 Poland PGS000030 evaluation
2 Poland PGS000348 development
3 Poland PGS000351 development
4 Poland PGS000719 development
[[8]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 ProMPT Prostate testing for cancer and Treatment
2 ProMPT ProMPT
3 ProMPT ProMPT
Slot "pgs_ids":
# A tibble: 4 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 ProMPT PGS000030 evaluation
2 ProMPT PGS000348 development
3 ProMPT PGS000351 development
4 ProMPT PGS000719 development
[[9]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 4 x 2
cohort_symbol cohort_name
<chr> <chr>
1 QLD Retrospective Queensland Study
2 QLD QLD
3 QLD Queensland Study
4 QLD QLD
Slot "pgs_ids":
# A tibble: 4 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 QLD PGS000030 evaluation
2 QLD PGS000348 development
3 QLD PGS000351 development
4 QLD PGS000719 development
[[10]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 BFBOCC BFBOCC
2 BFBOCC Baltic Famiial Breast and Ovarian Cancer Consortium
3 BFBOCC Baltic Familial Breast Ovarian Cancer Consortium
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 BFBOCC PGS000045 evaluation
2 BFBOCC PGS000046 evaluation
3 BFBOCC PGS000047 evaluation
4 BFBOCC PGS000049 evaluation
5 BFBOCC PGS000004 evaluation
6 BFBOCC PGS000005 evaluation
7 BFBOCC PGS000006 evaluation
8 BFBOCC PGS000351 evaluation
9 BFBOCC PGS000352 evaluation
10 BFBOCC PGS000351 development
11 BFBOCC PGS000352 development
12 BFBOCC PGS000724 development
[[11]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 BRICOH Beckman Research Institute City of Hope
2 BRICOH BRICOH
3 BRICOH Beckman Research Institute of the City of Hope
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 BRICOH PGS000045 evaluation
2 BRICOH PGS000046 evaluation
3 BRICOH PGS000047 evaluation
4 BRICOH PGS000049 evaluation
5 BRICOH PGS000004 evaluation
6 BRICOH PGS000005 evaluation
7 BRICOH PGS000006 evaluation
8 BRICOH PGS000351 evaluation
9 BRICOH PGS000352 evaluation
10 BRICOH PGS000724 development
11 BRICOH PGS000351 development
12 BRICOH PGS000352 development
[[12]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 DKFZ "German Cancer Research Centre"
2 DKFZ "DKFZ"
3 DKFZ " Deutsches Krebsforschungszentrum"
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 DKFZ PGS000045 evaluation
2 DKFZ PGS000046 evaluation
3 DKFZ PGS000047 evaluation
4 DKFZ PGS000049 evaluation
5 DKFZ PGS000004 evaluation
6 DKFZ PGS000005 evaluation
7 DKFZ PGS000006 evaluation
8 DKFZ PGS000351 evaluation
9 DKFZ PGS000352 evaluation
10 DKFZ PGS000724 development
11 DKFZ PGS000351 development
12 DKFZ PGS000352 development
[[13]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 EMBRACE Epidemiological Study of Familial Breast Cancer
2 EMBRACE EMBRACE
3 EMBRACE Epidemiological study of BRCA1 and BRCA2 mutation carriers
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 EMBRACE PGS000045 evaluation
2 EMBRACE PGS000046 evaluation
3 EMBRACE PGS000047 evaluation
4 EMBRACE PGS000049 evaluation
5 EMBRACE PGS000004 evaluation
6 EMBRACE PGS000005 evaluation
7 EMBRACE PGS000006 evaluation
8 EMBRACE PGS000351 evaluation
9 EMBRACE PGS000352 evaluation
10 EMBRACE PGS000724 development
11 EMBRACE PGS000351 development
12 EMBRACE PGS000352 development
[[14]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 HEBON DNA HEBON
2 HEBON Hereditary Breast and Ovarian Study Netherlands
3 HEBON DNA HEBON
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 HEBON PGS000045 evaluation
2 HEBON PGS000046 evaluation
3 HEBON PGS000047 evaluation
4 HEBON PGS000049 evaluation
5 HEBON PGS000004 evaluation
6 HEBON PGS000005 evaluation
7 HEBON PGS000006 evaluation
8 HEBON PGS000351 evaluation
9 HEBON PGS000352 evaluation
10 HEBON PGS000351 development
11 HEBON PGS000352 development
12 HEBON PGS000724 development
[[15]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 HUNBOCS HUNBOCS
2 HUNBOCS Molecular Genetic Studies of Breast- and Ovarian Cancer in Hungary
3 HUNBOCS Molecular Genetic Studies of Breast- and Ovarian Cancer in Hungary
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 HUNBOCS PGS000045 evaluation
2 HUNBOCS PGS000046 evaluation
3 HUNBOCS PGS000047 evaluation
4 HUNBOCS PGS000049 evaluation
5 HUNBOCS PGS000004 evaluation
6 HUNBOCS PGS000005 evaluation
7 HUNBOCS PGS000006 evaluation
8 HUNBOCS PGS000351 evaluation
9 HUNBOCS PGS000352 evaluation
10 HUNBOCS PGS000351 development
11 HUNBOCS PGS000352 development
12 HUNBOCS PGS000724 development
[[16]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 IOVHBOCS Istituto Oncologico Veneto
2 IOVHBOCS IOVHBOCS
3 IOVHBOCS Instituto Oncologio Veneto
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 IOVHBOCS PGS000045 evaluation
2 IOVHBOCS PGS000046 evaluation
3 IOVHBOCS PGS000047 evaluation
4 IOVHBOCS PGS000049 evaluation
5 IOVHBOCS PGS000004 evaluation
6 IOVHBOCS PGS000005 evaluation
7 IOVHBOCS PGS000006 evaluation
8 IOVHBOCS PGS000351 evaluation
9 IOVHBOCS PGS000352 evaluation
10 IOVHBOCS PGS000724 development
11 IOVHBOCS PGS000351 development
12 IOVHBOCS PGS000352 development
[[17]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 IPOBCS Portuguese Oncology Institute-Porto Breast Cancer Study
2 IPOBCS IPOBCS
3 IPOBCS Portuguese Oncology Institue-Porto Breast Cancer Study
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 IPOBCS PGS000045 evaluation
2 IPOBCS PGS000046 evaluation
3 IPOBCS PGS000047 evaluation
4 IPOBCS PGS000049 evaluation
5 IPOBCS PGS000004 evaluation
6 IPOBCS PGS000005 evaluation
7 IPOBCS PGS000006 evaluation
8 IPOBCS PGS000351 evaluation
9 IPOBCS PGS000352 evaluation
10 IPOBCS PGS000724 development
11 IPOBCS PGS000351 development
12 IPOBCS PGS000352 development
[[18]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MAYO The Mayo Clinic study
2 Mayo UNKNOWN
3 MAYO The Mayo Clinic study
Slot "pgs_ids":
# A tibble: 19 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MAYO PGS000004 evaluation
2 MAYO PGS000005 evaluation
3 MAYO PGS000006 evaluation
4 MAYO PGS000045 evaluation
5 MAYO PGS000046 evaluation
6 MAYO PGS000047 evaluation
7 MAYO PGS000049 evaluation
8 MAYO PGS000351 evaluation
9 MAYO PGS000352 evaluation
10 Mayo PGS000011 evaluation
11 Mayo PGS000013 evaluation
12 Mayo PGS000018 evaluation
13 Mayo PGS000200 evaluation
14 MAYO PGS000348 development
15 MAYO PGS000351 development
16 MAYO PGS000352 development
17 MAYO PGS000663 development
18 MAYO PGS000724 development
19 MAYO PGS000725 development
[[19]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MUV MUV
2 MUV Medical University of Vienna
3 MUV General Hospital Vienna
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MUV PGS000045 evaluation
2 MUV PGS000046 evaluation
3 MUV PGS000047 evaluation
4 MUV PGS000049 evaluation
5 MUV PGS000004 evaluation
6 MUV PGS000005 evaluation
7 MUV PGS000006 evaluation
8 MUV PGS000351 evaluation
9 MUV PGS000352 evaluation
10 MUV PGS000351 development
11 MUV PGS000352 development
12 MUV PGS000724 development
[[20]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 OCGN OCGN
2 OCGN Ontario Cancer Genetics Network
3 OCGN Ontario Cancer Genetics Network
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 OCGN PGS000045 evaluation
2 OCGN PGS000046 evaluation
3 OCGN PGS000047 evaluation
4 OCGN PGS000049 evaluation
5 OCGN PGS000004 evaluation
6 OCGN PGS000005 evaluation
7 OCGN PGS000006 evaluation
8 OCGN PGS000351 evaluation
9 OCGN PGS000352 evaluation
10 OCGN PGS000351 development
11 OCGN PGS000352 development
12 OCGN PGS000724 development
[[21]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 OUH OUH
2 OUH Odense University Hospital
3 OUH Odense University Hospital
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 OUH PGS000045 evaluation
2 OUH PGS000046 evaluation
3 OUH PGS000047 evaluation
4 OUH PGS000049 evaluation
5 OUH PGS000004 evaluation
6 OUH PGS000005 evaluation
7 OUH PGS000006 evaluation
8 OUH PGS000351 evaluation
9 OUH PGS000352 evaluation
10 OUH PGS000351 development
11 OUH PGS000352 development
12 OUH PGS000724 development
[[22]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 HCSC HCSC
2 HCSC HCSC
3 HCSC Hospital Clinico San Carlos
Slot "pgs_ids":
# A tibble: 31 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 HCSC PGS000001 evaluation
2 HCSC PGS000004 evaluation
3 HCSC PGS000005 evaluation
4 HCSC PGS000006 evaluation
5 HCSC PGS000045 evaluation
6 HCSC PGS000046 evaluation
7 HCSC PGS000047 evaluation
8 HCSC PGS000049 evaluation
9 HCSC PGS000004 evaluation
10 HCSC PGS000005 evaluation
11 HCSC PGS000006 evaluation
12 HCSC PGS000351 evaluation
13 HCSC PGS000352 evaluation
14 HCSC PGS000724 development
15 HCSC PGS000004 development
16 HCSC PGS000005 development
17 HCSC PGS000006 development
18 HCSC PGS000007 development
19 HCSC PGS000008 development
20 HCSC PGS000009 development
21 HCSC PGS000212 development
22 HCSC PGS000213 development
23 HCSC PGS000214 development
24 HCSC PGS000215 development
25 HCSC PGS000216 development
26 HCSC PGS000344 development
27 HCSC PGS000345 development
28 HCSC PGS000346 development
29 HCSC PGS000347 development
30 HCSC PGS000351 development
31 HCSC PGS000352 development
[[23]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MSKCC Memorial-Sloan Kettering Lymphoproliferative disorders Study
2 MSKCC Memorial-Sloan Kettering Cancer Centre
3 MSKCC Memorial-Sloan Kettering cancer centre
Slot "pgs_ids":
# A tibble: 30 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MSKCC PGS000045 evaluation
2 MSKCC PGS000046 evaluation
3 MSKCC PGS000047 evaluation
4 MSKCC PGS000049 evaluation
5 MSKCC PGS000004 evaluation
6 MSKCC PGS000005 evaluation
7 MSKCC PGS000006 evaluation
8 MSKCC PGS000351 evaluation
9 MSKCC PGS000352 evaluation
10 MSKCC PGS000004 development
11 MSKCC PGS000005 development
12 MSKCC PGS000006 development
13 MSKCC PGS000007 development
14 MSKCC PGS000008 development
15 MSKCC PGS000009 development
16 MSKCC PGS000212 development
17 MSKCC PGS000213 development
18 MSKCC PGS000214 development
19 MSKCC PGS000215 development
20 MSKCC PGS000216 development
21 MSKCC PGS000344 development
22 MSKCC PGS000345 development
23 MSKCC PGS000346 development
24 MSKCC PGS000347 development
25 MSKCC PGS000351 development
26 MSKCC PGS000352 development
27 MSKCC PGS000720 development
28 MSKCC PGS000724 development
29 MSKCC PGS000725 development
30 MSKCC PGS000663 development
[[24]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MYBRCA Malaysian Breast Cancer Genetic Study
2 MyBrCA UNKNOWN
3 MyBrCa UNKNOWN
Slot "pgs_ids":
# A tibble: 10 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MYBRCA PGS000004 evaluation
2 MYBRCA PGS000050 evaluation
3 MyBrCA PGS000344 evaluation
4 MyBrCA PGS000345 evaluation
5 MyBrCA PGS000346 evaluation
6 MyBrCA PGS000347 evaluation
7 MyBrCa PGS000344 evaluation
8 MyBrCa PGS000346 evaluation
9 MyBrCa PGS000347 evaluation
10 MYBRCA PGS000050 development
[[25]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 DACHS Darmkrebs: Chancen der Verhütung durch Screening
2 DACHS Darmkrebs: Chancen der Verhétung durch Screening
3 DACHS Darmkrebs: Chancen der Verhétung durch Screening
Slot "pgs_ids":
# A tibble: 4 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 DACHS PGS000055 evaluation
2 DACHS PGS000146 evaluation
3 DACHS PGS000148 evaluation
4 DACHS PGS000720 development
[[26]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 BioVu BioVU, the Vanderbilt DNA Databank project
2 BioVU UNKNOWN
3 BioVu BioVU, the Vanderbilt DNA Databank project
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 BioVu PGS000133 evaluation
2 BioVU PGS000011 evaluation
3 BioVU PGS000013 evaluation
4 BioVU PGS000018 evaluation
5 BioVU PGS000200 evaluation
6 BioVU PGS000349 development
7 BioVU PGS000351 development
8 BioVU PGS000352 development
9 BioVU PGS000722 development
10 BioVU PGS000724 development
11 BioVu PGS000721 development
12 BioVu PGS000726 development
[[27]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MAYO The Mayo Clinic study
2 Mayo UNKNOWN
3 MAYO The Mayo Clinic study
Slot "pgs_ids":
# A tibble: 19 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MAYO PGS000004 evaluation
2 MAYO PGS000005 evaluation
3 MAYO PGS000006 evaluation
4 MAYO PGS000045 evaluation
5 MAYO PGS000046 evaluation
6 MAYO PGS000047 evaluation
7 MAYO PGS000049 evaluation
8 MAYO PGS000351 evaluation
9 MAYO PGS000352 evaluation
10 Mayo PGS000011 evaluation
11 Mayo PGS000013 evaluation
12 Mayo PGS000018 evaluation
13 Mayo PGS000200 evaluation
14 MAYO PGS000348 development
15 MAYO PGS000351 development
16 MAYO PGS000352 development
17 MAYO PGS000663 development
18 MAYO PGS000724 development
19 MAYO PGS000725 development
[[28]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 BioVu BioVU, the Vanderbilt DNA Databank project
2 BioVU UNKNOWN
3 BioVu BioVU, the Vanderbilt DNA Databank project
Slot "pgs_ids":
# A tibble: 12 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 BioVu PGS000133 evaluation
2 BioVU PGS000011 evaluation
3 BioVU PGS000013 evaluation
4 BioVU PGS000018 evaluation
5 BioVU PGS000200 evaluation
6 BioVU PGS000349 development
7 BioVU PGS000351 development
8 BioVU PGS000352 development
9 BioVU PGS000722 development
10 BioVU PGS000724 development
11 BioVu PGS000721 development
12 BioVu PGS000726 development
[[29]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 4 x 2
cohort_symbol cohort_name
<chr> <chr>
1 deCODE deCODE Genetics
2 DECODE UNKNOWN
3 DeCODE UNKNOWN
4 deCODE deCODE Genetics
Slot "pgs_ids":
# A tibble: 14 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 deCODE PGS000208 evaluation
2 deCODE PGS000010 development
3 deCODE PGS000020 development
4 deCODE PGS000207 development
5 deCODE PGS000209 development
6 deCODE PGS000331 development
7 deCODE PGS000348 development
8 deCODE PGS000350 development
9 deCODE PGS000664 development
10 DECODE PGS000664 development
11 DeCODE PGS000665 development
12 deCODE PGS000721 development
13 deCODE PGS000722 development
14 deCODE PGS000723 development
[[30]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 HABCS Hannover Breast Cancer Study
2 HABCS Hannover Breast Cancer study
3 HABCS UNKNOWN
Slot "pgs_ids":
# A tibble: 7 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 HABCS PGS000004 evaluation
2 HABCS PGS000212 development
3 HABCS PGS000213 development
4 HABCS PGS000214 development
5 HABCS PGS000215 development
6 HABCS PGS000216 development
7 HABCS PGS000335 development
[[31]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MYBRCA Malaysian Breast Cancer Genetic Study
2 MyBrCA UNKNOWN
3 MyBrCa UNKNOWN
Slot "pgs_ids":
# A tibble: 10 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MYBRCA PGS000004 evaluation
2 MYBRCA PGS000050 evaluation
3 MyBrCA PGS000344 evaluation
4 MyBrCA PGS000345 evaluation
5 MyBrCA PGS000346 evaluation
6 MyBrCA PGS000347 evaluation
7 MyBrCa PGS000344 evaluation
8 MyBrCa PGS000346 evaluation
9 MyBrCa PGS000347 evaluation
10 MYBRCA PGS000050 development
[[32]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 MYBRCA Malaysian Breast Cancer Genetic Study
2 MyBrCA UNKNOWN
3 MyBrCa UNKNOWN
Slot "pgs_ids":
# A tibble: 10 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 MYBRCA PGS000004 evaluation
2 MYBRCA PGS000050 evaluation
3 MyBrCA PGS000344 evaluation
4 MyBrCA PGS000345 evaluation
5 MyBrCA PGS000346 evaluation
6 MyBrCA PGS000347 evaluation
7 MyBrCa PGS000344 evaluation
8 MyBrCa PGS000346 evaluation
9 MyBrCa PGS000347 evaluation
10 MYBRCA PGS000050 development
[[33]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 DEMOKRITOS UNKNOWN
2 Demokritos Hellenic Cooperative Oncology Group
3 Demokritos Hellenic Cooperative Oncology Group
Slot "pgs_ids":
# A tibble: 15 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 DEMOKRITOS PGS000001 evaluation
2 DEMOKRITOS PGS000002 evaluation
3 DEMOKRITOS PGS000003 evaluation
4 DEMOKRITOS PGS000045 evaluation
5 DEMOKRITOS PGS000046 evaluation
6 DEMOKRITOS PGS000047 evaluation
7 DEMOKRITOS PGS000049 evaluation
8 Demokritos PGS000004 evaluation
9 Demokritos PGS000005 evaluation
10 Demokritos PGS000006 evaluation
11 Demokritos PGS000351 evaluation
12 Demokritos PGS000352 evaluation
13 Demokritos PGS000351 development
14 Demokritos PGS000352 development
15 Demokritos PGS000724 development
[[34]]
An object of class "cohorts"
Slot "cohorts":
# A tibble: 3 x 2
cohort_symbol cohort_name
<chr> <chr>
1 UCSANFRAN University of California San Francisco
2 UCSANFRAN UNKNOWN
3 UCSANFRAN University of California San Francisco
Slot "pgs_ids":
# A tibble: 10 x 3
cohort_symbol pgs_id stage
<chr> <chr> <chr>
1 UCSANFRAN PGS000004 evaluation
2 UCSANFRAN PGS000005 evaluation
3 UCSANFRAN PGS000006 evaluation
4 UCSANFRAN PGS000351 evaluation
5 UCSANFRAN PGS000352 evaluation
6 UCSANFRAN PGS000351 development
7 UCSANFRAN PGS000352 development
8 UCSANFRAN PGS000663 development
9 UCSANFRAN PGS000724 development
10 UCSANFRAN PGS000725 development
from pgs_catalog.
smlmbrt
commented on September 27, 2024
Will be solved in the next data release
from pgs_catalog.
Related Issues (20)
- Remove windows carriage returns from scoring files during import HOT 1
- Add new traits to release dashboard HOT 1
- Ref genome validator: Add support for indels
- Add link to EBI data preservation in footer
- Filter scores by minimum number of variants rather than exact number
- Update effect/other_allele scoring file schema
- Potential duplicated study names in Curation Tracker from the same Litsuggest import
- Curation: Show lifted embargos in ready-for-release table
- New traits count discrepancy
- Improve import_studies error reporting
- Ancestries filters not working together with "show european" or "only multi-ancestry"
- Make the list of eligible publications visible
- Add scores evaluated on the sample on Sample Set page
- Search by SNP Not Available HOT 1
- Add new preprint citation to the website
- Test sites are getting indexed in google
- Import GWAS Catalog Cohort information
- Storage of Redundant Scores HOT 1
- Missing new trait in /releases table
- Scores with negative correlations/directions HOT 2
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