Comments (2)
Oh, I thought that it was author-uploaded like G.E.O. Good to know that it is usually the database maintainers instead.
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Hi @DarioS, correct many of the scores in the Catalog are curated by extracting information from the source publications. I have previously double checked the original author-reported files from their figshare and we are currently consistent with their notation. Indeed, others have noted that this score appears flipped to us and when I’ve used it in my own work I’ve used the score as-is but taken the reciprocal effect size to make it the same direction as the other CAD scores when comparing it’s performance. I’ll e-mail the authors again to double-check, but we try to keep as close to the author-reported files as possible (so the data provenance is clear).
We will consider your suggestion about whether to mark the source of the data, it it known to us internally.
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Related Issues (20)
- Making curation tracker curation_status read-only
- Update validator and doc to allow scoring files without effect_weight column but with dosage_#_weight column
- QC of the variant positions and reported traits during import
- Improving the reported trait QC during import
- Remove windows carriage returns from scoring files during import HOT 1
- Add new traits to release dashboard HOT 1
- Ref genome validator: Add support for indels
- Add link to EBI data preservation in footer
- Filter scores by minimum number of variants rather than exact number
- Update effect/other_allele scoring file schema
- Potential duplicated study names in Curation Tracker from the same Litsuggest import
- Curation: Show lifted embargos in ready-for-release table
- New traits count discrepancy
- Improve import_studies error reporting
- Ancestries filters not working together with "show european" or "only multi-ancestry"
- Make the list of eligible publications visible
- Add scores evaluated on the sample on Sample Set page
- Search by SNP Not Available HOT 1
- Add new preprint citation to the website
- Test sites are getting indexed in google
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