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Pat Gunn's Projects

caiman icon caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

canvaslogo icon canvaslogo

Demonstration of a simple javascript implementation of Turtle Logo using the HTML5 Canvas element

catmaid icon catmaid

Collaborative Annotation Toolkit for Massive Amounts of Image Data

chroma icon chroma

Chromatin Accessibility Annotation Tool

cloud-volume icon cloud-volume

Client for reading and writing to Neuroglancer Precomputed volumes on cloud services.

conda icon conda

OS-agnostic, system-level binary package manager and ecosystem

dbinfer icon dbinfer

Summarise a DB, infer table relationships based on analysis

diced icon diced

Interface that allows versioned access to cloud-backed nD datasets.

dvid icon dvid

Distributed, Versioned, Image-oriented Dataservice

ffn icon ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

flypylib icon flypylib

flyem python library for synapse/object detection

igneous icon igneous

Python based pipeline for Downsampling, Mesh, Remapping, and more. Originally by Nacho and Will.

ipta icon ipta

A smart wrapper for Linux's iptables command

metavpn icon metavpn

Wrapper for OpenVPN, makes it easy to script

mongoe icon mongoe

Mongo Endpoint (this is not a product from MongoDB Inc)

neuclease icon neuclease

Tools for computing interactive "cleaves" of agglomerated neuron fragments from a DVID server.

pound icon pound

Automatically exported from code.google.com/p/pound

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