Comments (3)
ssalentin
commented on May 21, 2024
Can you try with the latest release from GitHub (PLIP v1.3.4b). This is the same version we have on the server and works for the structure 1bju (I have tested it locally). Otherwise, please try the latest development version from GitHub.
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o7o
commented on May 21, 2024
I have tested the latest release in my Windows system, but the same error results.
sorry for late information.
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ssalentin
commented on May 21, 2024
Problem was due to additional carriage return characters probably added from the Windows system. They are now removed before processing. Fix added to development commit 78aedc4 . Was already tested on the provided files and works now as expected.
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Related Issues (20)
- Salt Bridge recognised although it should not HOT 1
- interactions between protein and ligand only ?? HOT 3
- Is there a bug on waterbridge atom index? HOT 1
- Water bridge water_angle HOT 3
- Plip shows same Hydrogen Bond twice (Donor and Acceptor switched)
- Segfault again... HOT 6
- Add explanation for OpenBabel atom groups to README
- Interpretation of results HOT 3
- XML filename shouldn't be `report.xml` HOT 2
- Openbabel package name conflict HOT 2
- python module stuck in loop with some pdb files
- Traceback (most recent call last): File "/plip/plip/plipcmd.py", line 16, in <module> from plip.basic import config, logger ModuleNotFoundError: No module named 'plip' HOT 1
- How to go about finding interacting Amino Acid Residues of ~1 billion compounds (In PDBQT) HOT 1
- Batch mode for protein-peptide
- pymol.CmdException: Error: Object not found
- << PLIP took forever >>
- Segmentation error with pdb files: HOT 1
- Calculate and report interactions for just one amino acid residue
- Generated RST file missing blank line after section titles
- Option not to add whitespace after trimming
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