philge Goto Github PK

amp-rnaseq

Code for reprocessing the RNAseq data from AMP-AD.

assemblathon

Code that was used in the Assemblathon 1 and 2 projects

brain_reg_net

Gene regulatory network from mRNA data of brain

codes

Codes I have written

comparative-annotation-toolkit

covariateanalysis

deinterlace

Deinterlaces paired-end FASTQ files into first and second strand files.

ibse-iitm.github.io

github.io pages

intro_to_ngs

lichen_genomics

course material for the workshop on lichen genomics 2 in graz

metagenomics-workshop

Metagenomics Workshop

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

orphan-prediction

methods for orphan gene prediction paper optimization

rbc-dsai-iitm.github.io

Homepage for the Robert Bosch Centre for Data Sciences & Artificial Intelligence at IIT Madras

repurpose

Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

talon

Technology agnostic long read analysis pipeline for transcriptomes

wes-relation

whirlwindtourofpython

The Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"