Comments (3)
Usually, the dataset name coincides with the short name of its datatype (e.g., zip, txt, etc.).
To set the short name we need to add a proper metadata attribute to the class which implements the dataset datatype as in fix/isa-datatype-rename-dataset.
To dynamically define a dataset name using the dataset content we need to patch the post processing phase of the Galaxy JobWrapper.
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I've done it using a hack that I don't understand, so it can be perfected...
What needs to be done also is to not rely only on the ISA identifier for the dataset name, since it could not exist. Use the filename in case no identifier is defined, and set a constant name like "ISA dataset" as default.
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Done
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Related Issues (17)
- Galaxy should report job as failed if Kubernetes cannot pull the image
- ISA-Tab type HOT 15
- ISA-Tab logging is not working properly HOT 9
- ISA-Tab no primary file displayed HOT 39
- ISA-Tab/ISA-Json code merging HOT 3
- Use ISA type in tool input HOT 3
- Use ISA data type as output of mtbls-dwnld HOT 1
- No ISA composite type displayed in uploader HOT 1
- Generation of primary file in ISA datatype HOT 2
- Remove the sniff method of the ISA data type HOT 1
- Split ISA type into ISA-Tab and ISA-JSON
- Update mzml2isa to new ISA datatype HOT 9
- Update nmrml2isa to new ISA datatype HOT 4
- Integrate isatools Python2 version in requirements HOT 1
- Failed to upload MTBLS520 HOT 18
- NmrML datatype is missing HOT 1
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