Comments (3)
Make traversals in terms of const references?
from bito.
Is this worth it? This will make detrifurcation more difficult.
... the bottleneck is likelihood computation, so the overhead of lots of shared pointers is minimal...
from bito.
We clearly can't just replace shared_ptr with weak_ptr. It also won't work to have a plain Node as what we pass about, because then if we want the same tree two places, then that will violate unique_ptr.
from bito.
Related Issues (20)
- Top-Pruning: PLVHandler Update
- Top-Pruning: ChoiceMap -- TreeMask Update and Build Trees HOT 3
- parsimony 1: perform Sankoff on trees HOT 2
- parsimony 2 Sankoff on DAG
- Top-Pruning: Top-Pruning Engine & Init on Tree HOT 2
- yet more iteration over unordered maps leading to inconsistent behavior
- TPEngine: Init DAG for Likelihood
- TPEngine: Init DAG for Parsimony
- TPEngine: Update after Add NNI
- TPEngine: Add Rescaling to Likelihood Computations
- TPEngine: Move PVs from Node-based to Edge-based HOT 2
- Interfaces for Evaluation Engines
- Optimization fails after Brent templating
- TPEngine: Assign an edge's neighbors based on "edge heuristic" instead of "subsplit heuristic". HOT 2
- Errors compiling bito with GitHub action and locally
- Rooted trees ignore original taxa labels
- SubsplitDAG: Add map for quick lookup of parent and child nodes.
- DAGStorage throws error where line references a line outside of range.
- Bug: GP Branch lengths are not being updated from default branch length during NNI search.
- Add Dockerfile
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