Related Issues (20)
- Top-Pruning: PLVHandler Update
- Top-Pruning: ChoiceMap -- TreeMask Update and Build Trees HOT 3
- parsimony 1: perform Sankoff on trees HOT 2
- parsimony 2 Sankoff on DAG
- Top-Pruning: Top-Pruning Engine & Init on Tree HOT 2
- yet more iteration over unordered maps leading to inconsistent behavior
- TPEngine: Init DAG for Likelihood
- TPEngine: Init DAG for Parsimony
- TPEngine: Update after Add NNI
- TPEngine: Add Rescaling to Likelihood Computations
- TPEngine: Move PVs from Node-based to Edge-based HOT 2
- Interfaces for Evaluation Engines
- Optimization fails after Brent templating
- TPEngine: Assign an edge's neighbors based on "edge heuristic" instead of "subsplit heuristic". HOT 2
- Errors compiling bito with GitHub action and locally
- Rooted trees ignore original taxa labels
- SubsplitDAG: Add map for quick lookup of parent and child nodes.
- DAGStorage throws error where line references a line outside of range.
- Bug: GP Branch lengths are not being updated from default branch length during NNI search.
- Add Dockerfile
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from bito.