pjbriggs Goto Github PK

aafc-galaxy

Galaxy tool wrappers, tool dependencies, and workflows.

amplicon_analysis

amplicon_analysis-galaxy

Galaxy tools for Mauro Tutino's microbiome pipeline scripts https://github.com/MTutino/Amplicon_analysis

ansible-palfinder-galaxy

Ansible playbooks for deploying BCF-managed Galaxy instances on UoM VMs

arqvist

Utility to explore and curate NGS data

auto_process-extras

Experimental utility scripts to supplement auto_process_ngs

bgruening-galaxytools

Galaxy Tool wrappers

bioconda-recipes

Conda recipes for the bioconda channel.

bioinf-software-install

Scripts to help with building and deploying bioinformatics software

cargo-port

cache packages permanently

craft-gp

craft-gp-galaxy

Galaxy tools to wrap the CRAFT-GP pipeline

dapars

DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)

download_archive

Storage of 3rd-party tarballs etc

fedora-rpms-bioinf

Spec files and resources for building Fedora RPMS

fedora-rpms-verdurin

RPM Packaging work for Fedora

fusebox

Implements read-only virtual filesystem with finer grained user access

galaxy

Data intensive biology for everyone.

galaxy-admin-utils

Utility scripts for working with local instances of Penn State's Galaxy platform http://wiki.galaxyproject.org/

galaxy-hub

Galaxy project website, aka Galaxy Community Hub

genomics-update-qc-reports

Making improvements to the reports from the QC pipeline in the genomics repository

lparsons-galaxy_tools

Wrappers for galaxy tools

md5compare

Graphical utility to recursively compare the contents of two directories using MD5 checksums.

mock-utils

Utility scripts for building RPMs using mock

nebulizer

Command line utilities to help manage users, tools and data libraries in a Galaxy instance via the API

pal_filter

Program to pick optimum loci from the output of pal_finder_v0.02.04 This program can be used to filter output from pal_finder and choose the 'optimum' loci. For the paper referencing this workflow, see Griffiths et al. (unpublished as of 15/02/2016) ([email protected])

scripting-and-programming

Notes and recipes for scripting and programming

snp2hla-p

stoker

Utility to help examine and archive NGS data from SOLiD and Illumina sequencing platforms

tools-devteam

Contains a set of Galaxy Tools mostly written by the Galaxy Team.