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Bioinfarmer's Projects

as_analysis icon as_analysis

A complete Snakemake pipeline for detecting allele specific expression

biofx_python icon biofx_python

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

deepgs icon deepgs

DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.

dnngp icon dnngp

DNNGP: Deep neural network for genomic prediction

fastaq icon fastaq

Python3 scripts to manipulate FASTA and FASTQ files

funricegenes icon funricegenes

The knowledge of cloned rice genes lost in the information of rice functional genomics studies

g2p icon g2p

G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluation measurements.

jwasr icon jwasr

R wrapper for JWAS, with shiny GUI app inside.

metax icon metax

metaX: a flexible and comprehensive software for processing omics data.

mixomics icon mixomics

Master and devel repo for mixOmics on BioC

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