Convert gbif download into api query

[plantnet]

Convert gbif download into api query

[faroit]

we can probably do this using gbifpy:

occ.download_meta(key = "0117522-200613084148143")

[faroit]

@jclombar @alexisjoly is this still relevant? What would be a typical workflow?

[jclombar]

No idea...

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----- Mail original -----

De: "Fabian-Robert Stöter" ***@***.***> À: "plantnet/gbif-dl" ***@***.***> Cc: "Jean-Christophe Lombardo" ***@***.***>, "Mention" ***@***.***> Envoyé: Mardi 14 Septembre 2021 15:16:50 Objet: Re: [plantnet/gbif-dl] Convert gbif download into api query (#21) @jclombar @alexisjoly is this still relevant? What would be a typical workflow? -- You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub: #21 (comment)

[alexisjoly]

Le 14 sept. 2021 à 15:16, Fabian-Robert Stöter ***@***.***> a écrit : @jclombar <https://github.com/jclombar> @alexisjoly <https://github.com/alexisjoly> is this still relevant?

I think yes.

What would be a typical workflow?

1. Pierre Bonnet (botanist) makes use of GBIF web portal to create the most appropriate query (check images, filter data providers not in the scope, filter taxa, data types, etc.) 2. JC-Lombardo converts it to an API query to download efficiently, balance across classes, etc.

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— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#21 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AIFXBZSLMXT5C7NC5SEULS3UB5DMFANCNFSM4U6MIZUA>. Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[jclombar]

How is it different from using a gbif doi ?

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----- Mail original -----

De: "alexisjoly" ***@***.***> À: "plantnet/gbif-dl" ***@***.***> Cc: "Jean-Christophe Lombardo" ***@***.***>, "Mention" ***@***.***> Envoyé: Mercredi 15 Septembre 2021 09:22:21 Objet: Re: [plantnet/gbif-dl] Convert gbif download into api query (#21) > Le 14 sept. 2021 à 15:16, Fabian-Robert Stöter ***@***.***> a écrit : > > > @jclombar <https://github.com/jclombar> @alexisjoly > <https://github.com/alexisjoly> is this still relevant? > I think yes. > What would be a typical workflow? > 1. Pierre Bonnet (botanist) makes use of GBIF web portal to create the most appropriate query (check images, filter data providers not in the scope, filter taxa, data types, etc.) 2. JC-Lombardo converts it to an API query to download efficiently, balance across classes, etc. > — > You are receiving this because you were mentioned. > Reply to this email directly, view it on GitHub > <#21 (comment)>, or > unsubscribe > <https://github.com/notifications/unsubscribe-auth/AIFXBZSLMXT5C7NC5SEULS3UB5DMFANCNFSM4U6MIZUA>. > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. > -- You are receiving this because you were mentioned. Reply to this email directly or view it on GitHub: #21 (comment)

[faroit]

@jclombar the DOI is referring to a fixed/frozen number of observations. Being able to rerun a query could get more (up-do-date) data

[faroit]

@alexisjoly

What would be a typical workflow?

1. Pierre Bonnet (botanist) makes use of GBIF web portal to create the most appropriate query (check images, filter >data providers not in the scope, filter taxa, data types, etc.)
2. JC-Lombardo converts it to an API query to download efficiently, balance across classes, etc.

in that case using just the DOI is probably enough. This issue would allow @jclombar to rerun the query in case the data has changed. This (rerun and save the query under a new doi) can also be done via the gbif UI... so I'm not sure ;-)