Comments (5)
Another, perhaps better, solution for the treatment itself is to put its UUID in a treatment-meta section.
For other elements, appending the PWT UUID to the element's id
attribute is probably best
from taxpub.
OpenBiodiv generates UUID's to various elements in the XML. The list is still growing but at the moment it encompasses the following XML elements:
title: /article/front/article-meta/title-group/article-title
abstract: /article/front/article-meta/abstract
front_matter: /article/front
figures: /article/floats-group//fig
plates: /article/floats-group/fig-group
tables: /article/floats-group/table-wrap
reference_list: /article/back/ref-list
reference: /article/back/ref-list/ref
back_matter: /article/back
acknowledgement: /article/back/ack
body: /article/body
treatment: /article/body/sec/tp:taxon-treatment
nomenclature_heading: /article/body//tp:taxon-treatment/tp:nomenclature
nomenclature_citation_list: /article/body//tp:taxon-treatment/tp:nomenclature/tp:nomenclature-citation-list
treatment_section: /article/body/tp:taxon-treatment/tp:treatment-sec
sec: .//sec
captions: .//caption
authors: /article/front/article-meta/contrib-group/contrib
paper_type: /article/front/article-meta/article-categories/subj-group[@subj-group-type='heading']
taxon_classification: /article/front/article-meta/article-categories/subj-group[@subj-group-type='Taxon classification']
subject_classification: /article/front/article-meta/article-categories/subj-group[@subj-group-type='Subject classification']
geographic_classification: /article/front/article-meta/article-categories/subj-group[@subj-group-type='Geographical classification']
zookeys_keywords: /article/front/article-meta/kwd-group
taxonomic_name_usage: .//tp:taxon-name
named-content[@content-type='dwc:institutional_code']
To avoid data duplication if the XML is to be regenerated, the PWT process needs to generate these IDs.
We need to have a connection between Instance ID and UUID. They must appear in PREVIEW and a "modified" NLM must be available where the ID's have the attribute "obkms_id". However, they need to be hidden before submission to NLM.
File-Based process: upon generation of the preview, check the elements (whether they have ID) and then generate ID.
from taxpub.
possible solution: append UUID to existing id value, with or without a delimiter (e.g., underscore). This will insure uniqueness of the id, is opaque and innocuous to outside users, but enables local semantics
from taxpub.
or probably can use
from taxpub.
See also <object-id>
https://jats.nlm.nih.gov/publishing/tag-library/1.3/element/object-id.html when permitted
from taxpub.
Related Issues (20)
- JATS version used HOT 2
- taxononmic name id HOT 1
- contributor tag
- version citation in identifier article
- what is the reference tag set: Journal Archiving and Interchange Tag Library or Journal Publishing Tag Library HOT 1
- JATS article title uuid HOT 2
- New TaxPub and JATS versions HOT 5
- taxpub validation: can material citation include multiple paragraphs in taxpub? HOT 1
- jats-common-atts superfluous in treatment-sec HOT 2
- Allow tables and graphics between treatment sections HOT 1
- add element descriptions to documentation HOT 1
- Create Schematron for recommended constraints
- Review, revise, and augment element descriptions
- <x> in <tp:nomenclature> causes validity error
- @hreflang missing from JATS elements in TaxPub
- import of TaxPub 1.0 to PMC HOT 2
- can a bibliographic reference be included taxonomic name in taxpub?
- GrSciColl identifiers use in taxpub of Metstem
- write a news item on the release of Taxpub
- add vocab attributes to taxon-name
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from taxpub.