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Name: Pedro Madrigal
Type: User
Company: EMBL-EBI
Bio: Senior Bioinformatician at the European Bioinformatics Institute
Twitter: compbiology
Location: Cambridge, UK
Name: Pedro Madrigal
Type: User
Company: EMBL-EBI
Bio: Senior Bioinformatician at the European Bioinformatics Institute
Twitter: compbiology
Location: Cambridge, UK
Scripts for the analysis of Antimicrobial Resistance (AMR) at International Space Station (ISS) surface microbiomes
Ansible Role - Apache Solr
Conda recipes for the bioconda channel.
Bioconductor package validator via Continuous Integration
A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.
Collection of bioinformatics training materials
minimal example implementations for bioinformatics workflow managers
Scripts to run footprinting and motif-flanking accessibility analysis in DNase-seq/ ATAC-seq data
V(D)J T Cell and B Cell Analysis with cellranger vdj
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Scripts for ChIA-drop data analysis
ChIP-exo data analysis in R
diffNGS: differential peak analysis in Next-Generation Sequencing data with replicates
Reconstructing dosimetric images using a deconvoluted physical model
Definitive endoderm differentiation of human ESCs in G1 phase of the cell cycle
Bioconductor package - functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
functional Canonical Correlation Analysis to evaluate Covariability between nucleic acid sequencing datasets
Legacy version of R package fCCAC - before submission to Bioconductor
A collection of examples, tips and tricks and snippets of scripting for the Jenkins Pipeline plugin
JSON validator in bash
Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve Transform
Detection of long non-coding RNAs (lncRNAs) during Spaceflight using RNA-seq data
Matrix and Analysis Metadata Standards
Scripts for neMeRIP-seq data analysis
A curated collection of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html
A simple example of a Random-Forest classifier
R package for Matrix and Analysis Metadata Standards
Jupyter notebooks to run interactive parts of the RNAcentral webinar
A single-cell atlas of lymphoma evolution
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.