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Comments (3)

arthuryxt avatar arthuryxt commented on July 22, 2024

Dear Authors,

I am also stuck there. Could you fix it?

Thanks,
Arthur

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emerygoossens avatar emerygoossens commented on July 22, 2024

I cannot seem to get past this part either. I am having trouble including additional covariates when using the fitFactor() function. In particular, when including a binary treatment/control vector, I get the following error.

CellCycle = fitFactor(sclvm,geneSet = ens_ids_cc,XKnown = cell_binary, k=1,use_ard = F)

Error in python.exec(paste("X,K,Kint,varGPLVM_ARD = ", objName, ".fitFactor(idx=idx, X0=X0, k=k,standardize=standardize, use_ard=use_ard, interaction=interaction, initMethod=initMethod)", :
ufunc 'divide' output (typecode 'd') could not be coerced to provided output parameter (typecode 'l') according to the casting rule ''same_kind''

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jshaik1979 avatar jshaik1979 commented on July 22, 2024

Same issue, has this been fixed? This is where it fails for me:
th2 = fitFactor(sclvmMult, idx = idx_Th2, XKnown = Xcc, k = 1, interaction=TRUE)

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