Comments (10)
@TomClegg94 The issue is in Parameters.jl
, and it should be temporarily fixed in a few hours.
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ChunkedArrays
are not required by BioEnergeticFoodWebs
-- so the problem may be with another package, or one of the dependencies.
When you run Pkg.status("BioEnergeticFoodWebs")
, do you see 0.3.0
?
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yep after installing all the packages listed above i now have 0.3.0
.
I'm now running into a problem when I load the package telling me it has failed to precompile the StochasticDiffEq module. I assume this is all due to the switching to the new differential equation solver
from bioenergeticfoodwebs.jl.
This is actually an issue in StochasticDiffEq
: SciML/StochasticDiffEq.jl#16 -- it should be solved soon.
You can temporarily work using 0.2.0
with
Pkg.pin("BioEnergeticFoodWebs", v"0.2.0")
when this will be fixed, just go through
Pkg.free("BioEnergeticFoodWebs")
Pkg.update()
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This should be fixed now. Sorry for the wait!
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The package is all working now and i'm on version 0.3.0
.
However, in order to get the new version I re-added the package Pkg.add("BioEnergeticFoodWebs")
with a clean install of Julia and got the same error as outlined in the first post (Julia wont install BioEnergeticFoodWebs
until all those other packages are manually installed)
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@TomClegg94 I'm unable to reproduce. How did you install Julia?
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I used the .dmg on julialang.org. I also use the Juno IDE on atom.
from bioenergeticfoodwebs.jl.
OK -- I see nothing in the code here that could trigger this error, and I'm unable to reproduce.
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@TomClegg94 can you post your Pkg.status()? Pinned packages can sometimes do this.
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Related Issues (20)
- Use ADBM model to generate foodwebs
- BoundsError in ADBM rewiring model when using with nutrient intake model.
- Chose candidates for rewiring in the ADBM model HOT 8
- Chose constraints for rewiring (trophic class changes)
- Instability detected when using temperature dependence on consumption rates HOT 1
- DomainError for some values of the hill exponent HOT 1
- Warning when running simulate(); canceled iteration HOT 5
- Extinctions not detected when initial biomass is set to 0.0
- Inability to save output HOT 4
- Store rewiring time steps
- Can't pass different carrying capacities for different producers HOT 1
- Temporal matrices are identical and ignore extinctions when there is no rewiring
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- "Classical" functional response
- TagBot trigger issue HOT 1
- Temperature scaled ADBM
- ADBM: biomass vs density
- Add non trophic interactions and stability measures HOT 8
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