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anexlearningsummit2023

Materials for AnExLearningSummit2023

assnake

Snakemake pipeline for metagenomics data. Part of Boimedical Research Platform.

assnake-core-preprocessing

assnake-dada2

atacseqqc

ATAC-seq Quality Control

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics_homeworks

https://PollyTikhonova.github.io/bioinformatics_homeworks/

chronos_for_galton

QGIS Python, which uses API Galton (galton.urbica.co) to build isochrones

coursework

https://PollyTikhonova.github.io/coursework/

dl-course

DL Course Materials

dmia

For homeworks of MIPT data mining course.

extract-subs

Python script to extract subtitles of mkv files or to download them from the Internet

faces_recognition

gloacademy_homeworks

https://pollytikhonova.github.io/GloAcademy_homeworks/

hythere

idr

IDR

imgqfinder

The official python version of ImGQfinder: http://imgqfinder.niifhm.ru/ A tool that finds gquadruplexes and imotifs.

itol

A Python API and a command-line tool for the Tree of Life

itol-client

A client that allows managing the iTOL data

jessev

Joint epitope selection and spacer design for string-of-beads vaccines

markerfinder

scripts for predicting phylogenetic marker genes

maxus

Test task for internship

neater-bookmarks

A neater bookmarks tree popup extension for Chrome

phigaro

Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.

phigaro_git_action

pollytikhonova.github.io

pymdown

CLI batch markdown converter/previewer. Wrapped around Python's Markdown Package and Pygments.

python_in_miigaik

https://pollytikhonova.github.io/Python_in_MIIGAiK/

qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

resume

https://pollytikhonova.github.io/Resume/