minimal.Rmd not found

[polymode]

minimal.Rmd not found

[vspinu]

What emacs is this? There is more output in that make all. Make sure it's the latest master. I don't see this error. I think you are not running in a git repo, do you?

[slyrus]

It's emacs 26.1_1, from MacOS hombrew. I'm using the latest master and am attempting to do make all in the git repo dir.

[slyrus]

Here's the full output:

(sly@montalcino):~/.emacs.d/site-lisp/modes/poly-R$ git log -1
commit 3d90219d7e099ba65449681700ffc62cf88d9cc4 (HEAD -> master, origin/master, origin/HEAD)
Author: Vitalie Spinu <[email protected]>
Date:   Sat Mar 23 22:24:56 2019 +0100

    Fix declarations
(sly@montalcino):~/.emacs.d/site-lisp/modes/poly-R$ git status
On branch master
Your branch is up to date with 'origin/master'.

nothing to commit, working tree clean
(sly@montalcino):~/.emacs.d/site-lisp/modes/poly-R$ make elpa
EMACS VERSION: 26.1
GIT HEAD: 3d90219
emacs -Q -L . -L modes -L tests -L .ELPA/26.1 --batch --load targets/melpa.el
Contacting host: melpa.org:443
Package refresh done
Setting ‘package-selected-packages’ temporarily since "emacs -q" would overwrite customizations
Setting ‘package-selected-packages’ temporarily since "emacs -q" would overwrite customizations
Contacting host: melpa.org:443
Generating autoloads for elisp-lint.el...
Generating autoloads for elisp-lint.el...done
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/elisp-lint-20180224.2042/elisp-lint-autoloads.el
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/elisp-lint-20180224.2042/elisp-lint-autoloads.el
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/elisp-lint-20180224.2042...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/elisp-lint-20180224.2042/elisp-lint-autoloads.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/elisp-lint-20180224.2042/elisp-lint-pkg.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/elisp-lint-20180224.2042/elisp-lint.el...
Done (Total of 1 file compiled, 2 skipped)
Setting ‘package-selected-packages’ temporarily since "emacs -q" would overwrite customizations
Contacting host: melpa.org:443
Parsing tar file...
Parsing tar file...done
Extracting julia-mode-20190111.2044/
Extracting julia-mode-20190111.2044/julia-mode.el
Extracting julia-mode-20190111.2044/julia-mode-pkg.el
Extracting julia-mode-20190111.2044/julia-latexsubs.el
Generating autoloads for julia-latexsubs.el...
Generating autoloads for julia-latexsubs.el...done
Generating autoloads for julia-mode-pkg.el...
Generating autoloads for julia-mode-pkg.el...done
Generating autoloads for julia-mode.el...
Generating autoloads for julia-mode.el...done
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044/julia-mode-autoloads.el
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044/julia-mode-autoloads.el
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044/julia-latexsubs.el...

In toplevel form:
julia-latexsubs.el:1:29:Warning: reference to free variable ‘julia-latexsubs’
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044/julia-mode-autoloads.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044/julia-mode-pkg.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044/julia-mode.el...
Done (Total of 2 files compiled, 2 skipped)
Contacting host: melpa.org:443
Parsing tar file...
Parsing tar file...done
Extracting ess-20190330.1523/
Extracting ess-20190330.1523/allnews.info
Extracting ess-20190330.1523/news.info
Extracting ess-20190330.1523/ess-pkg.el
Extracting ess-20190330.1523/mouseme.el
Extracting ess-20190330.1523/ess-s-lang.el
Extracting ess-20190330.1523/ess-sas-l.el
Extracting ess-20190330.1523/essd-els.el
Extracting ess-20190330.1523/license.info
Extracting ess-20190330.1523/ess-r-completion.el
Extracting ess-20190330.1523/ess-bugs-l.el
Extracting ess-20190330.1523/ess-tracebug.el
Extracting ess-20190330.1523/.dir-locals.el
Extracting ess-20190330.1523/ess.info
Extracting ess-20190330.1523/ess-sas-a.el
Extracting ess-20190330.1523/ess-r-xref.el
Extracting ess-20190330.1523/ess-bugs-d.el
Extracting ess-20190330.1523/bugrept.info
Extracting ess-20190330.1523/ess-r-mode.el
Extracting ess-20190330.1523/requires.info
Extracting ess-20190330.1523/ess-stata-lang.el
Extracting ess-20190330.1523/ess-sp6-d.el
Extracting ess-20190330.1523/make-regexp.el
Extracting ess-20190330.1523/ess-rutils.el
Extracting ess-20190330.1523/mailing.info
Extracting ess-20190330.1523/currfeat.info
Extracting ess-20190330.1523/ess-toolbar.el
Extracting ess-20190330.1523/ess-stata-mode.el
Extracting ess-20190330.1523/onews.info
Extracting ess-20190330.1523/ess-help.el
Extracting ess-20190330.1523/ess-defs.info
Extracting ess-20190330.1523/ess-trns.el
Extracting ess-20190330.1523/ess-r-flymake.el
Extracting ess-20190330.1523/ess-roxy.el
Extracting ess-20190330.1523/ess-r-package.el
Extracting ess-20190330.1523/announc.info
Extracting ess-20190330.1523/ess-rdired.el
Extracting ess-20190330.1523/dir
Extracting ess-20190330.1523/ess-gretl.el
Extracting ess-20190330.1523/ess-r-syntax.el
Extracting ess-20190330.1523/ess-utils.el
Extracting ess-20190330.1523/ess-rd.el
Extracting ess-20190330.1523/ess-mode.el
Extracting ess-20190330.1523/ess-custom.el
Extracting ess-20190330.1523/readme.info
Extracting ess-20190330.1523/ess-mouse.el
Extracting ess-20190330.1523/ess-inf.el
Extracting ess-20190330.1523/etc/
Extracting ess-20190330.1523/etc/icons/
Extracting ess-20190330.1523/etc/icons/rfunction.xpm
Extracting ess-20190330.1523/etc/icons/switchs.xpm
Extracting ess-20190330.1523/etc/icons/README
Extracting ess-20190330.1523/etc/icons/startr.xpm
Extracting ess-20190330.1523/etc/icons/switchr.xpm
Extracting ess-20190330.1523/etc/icons/spluslogo.xpm.safe
Extracting ess-20190330.1523/etc/icons/splus_letters_large.png
Extracting ess-20190330.1523/etc/icons/rbuffer.xpm
Extracting ess-20190330.1523/etc/icons/rline.xpm
Extracting ess-20190330.1523/etc/icons/switch_ess.xpm
Extracting ess-20190330.1523/etc/icons/spluslogo.xpm
Extracting ess-20190330.1523/etc/icons/splus_letters_large.xpm
Extracting ess-20190330.1523/etc/icons/splus_letter_small.xpm
Extracting ess-20190330.1523/etc/icons/rregion.xpm
Extracting ess-20190330.1523/etc/Makefile
Extracting ess-20190330.1523/etc/ess-julia.jl
Extracting ess-20190330.1523/etc/ESSR.rds
Extracting ess-20190330.1523/etc/ess-sas-sh-command
Extracting ess-20190330.1523/etc/ESSR/
Extracting ess-20190330.1523/etc/ESSR/LOADREMOTE
Extracting ess-20190330.1523/etc/ESSR/R/
Extracting ess-20190330.1523/etc/ESSR/R/.load.R
Extracting ess-20190330.1523/etc/ESSR/R/completion.R
Extracting ess-20190330.1523/etc/ESSR/R/misc.R
Extracting ess-20190330.1523/etc/ESSR/R/.basic.R
Extracting ess-20190330.1523/etc/ESSR/R/ns-eval.R
Extracting ess-20190330.1523/etc/ESSR/R/pkg.R
Extracting ess-20190330.1523/etc/ESSR/R/debug.R
Extracting ess-20190330.1523/etc/ESSR/R/mpi.R
Extracting ess-20190330.1523/etc/ESSR/BUILDESSR
Extracting ess-20190330.1523/ess-julia.el
Extracting ess-20190330.1523/credits.info
Extracting ess-20190330.1523/ess-jags-d.el
Extracting ess-20190330.1523/ess.el
Extracting ess-20190330.1523/ess-sas-d.el
Extracting ess-20190330.1523/authors.info
Extracting ess-20190330.1523/ess-site.el
Generating autoloads for ess-bugs-d.el...
Generating autoloads for ess-bugs-d.el...done
Generating autoloads for ess-bugs-l.el...
Generating autoloads for ess-bugs-l.el...done
Generating autoloads for ess-custom.el...
Generating autoloads for ess-custom.el...done
Generating autoloads for ess-gretl.el...
Generating autoloads for ess-gretl.el...done
Generating autoloads for ess-help.el...
Generating autoloads for ess-help.el...done
Generating autoloads for ess-inf.el...
Generating autoloads for ess-inf.el...done
Generating autoloads for ess-jags-d.el...
Generating autoloads for ess-jags-d.el...done
Generating autoloads for ess-julia.el...
Generating autoloads for ess-julia.el...done
Generating autoloads for ess-mode.el...
Generating autoloads for ess-mode.el...done
Generating autoloads for ess-mouse.el...
Generating autoloads for ess-mouse.el...done
Generating autoloads for ess-pkg.el...
Generating autoloads for ess-pkg.el...done
Generating autoloads for ess-r-completion.el...
Generating autoloads for ess-r-completion.el...done
Generating autoloads for ess-r-flymake.el...
Generating autoloads for ess-r-flymake.el...done
Generating autoloads for ess-r-mode.el...
Generating autoloads for ess-r-mode.el...done
Generating autoloads for ess-r-package.el...
Generating autoloads for ess-r-package.el...done
Generating autoloads for ess-r-syntax.el...
Generating autoloads for ess-r-syntax.el...done
Generating autoloads for ess-r-xref.el...
Generating autoloads for ess-r-xref.el...done
Generating autoloads for ess-rd.el...
Generating autoloads for ess-rd.el...done
Generating autoloads for ess-rdired.el...
Generating autoloads for ess-rdired.el...done
Generating autoloads for ess-roxy.el...
Generating autoloads for ess-roxy.el...done
Generating autoloads for ess-rutils.el...
Generating autoloads for ess-rutils.el...done
Generating autoloads for ess-s-lang.el...
Not registering prefix "S" from ess-s-lang.  Affects: ("S" "S+common-cust-alist" "S-syntax-table" "S-editing-alist" "S-common-cust-alist" "S-comment-indent" "S-transcript-mode" "S-mode")
Generating autoloads for ess-s-lang.el...done
Generating autoloads for ess-sas-a.el...
Generating autoloads for ess-sas-a.el...done
Generating autoloads for ess-sas-d.el...
Generating autoloads for ess-sas-d.el...done
Generating autoloads for ess-sas-l.el...
Generating autoloads for ess-sas-l.el...done
Generating autoloads for ess-site.el...
Generating autoloads for ess-site.el...done
Generating autoloads for ess-sp6-d.el...
Generating autoloads for ess-sp6-d.el...done
Generating autoloads for ess-stata-lang.el...
Generating autoloads for ess-stata-lang.el...done
Generating autoloads for ess-stata-mode.el...
Generating autoloads for ess-stata-mode.el...done
Generating autoloads for ess-toolbar.el...
Generating autoloads for ess-toolbar.el...done
Generating autoloads for ess-tracebug.el...
Generating autoloads for ess-tracebug.el...done
Generating autoloads for ess-trns.el...
Generating autoloads for ess-trns.el...done
Generating autoloads for ess-utils.el...
Generating autoloads for ess-utils.el...done
Generating autoloads for ess.el...
Generating autoloads for ess.el...done
Generating autoloads for essd-els.el...
Generating autoloads for essd-els.el...done
Generating autoloads for make-regexp.el...
Generating autoloads for make-regexp.el...done
Generating autoloads for mouseme.el...
Generating autoloads for mouseme.el...done
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-autoloads.el
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-autoloads.el
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-autoloads.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-bugs-d.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-bugs-l.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-custom.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-gretl.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-help.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-inf.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-jags-d.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-julia.el...
Loading /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/julia-mode-20190111.2044/julia-latexsubs...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-mode.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-mouse.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-pkg.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-r-completion.el...

In ess-ac-candidates:
ess-r-completion.el:469:16:Warning: ‘ess-ac-args’ is an obsolete function (as
    of ESS 19.04); Use company-mode-instead
ess-r-completion.el:475:25:Warning: ‘ess-ac-objects’ is an obsolete function
    (as of ESS 19.04); Use company-mode instead
ess-r-completion.el:475:40:Warning: ‘ess-ac-objects’ is an obsolete function
    (as of ESS 19.04); Use company-mode instead
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-r-flymake.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-r-mode.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-r-package.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-r-syntax.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-r-xref.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-rd.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-rdired.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-roxy.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-rutils.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-s-lang.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-sas-a.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-sas-d.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-sas-l.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-site.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-sp6-d.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-stata-lang.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-stata-mode.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-toolbar.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-tracebug.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-trns.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess-utils.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/ess.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/essd-els.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/make-regexp.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/mouseme.el...
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/etc...
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/etc/ESSR...
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/etc/icons...
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/ess-20190330.1523/etc/ESSR/R...
Done (Total of 36 files compiled, 2 skipped)
Setting ‘package-selected-packages’ temporarily since "emacs -q" would overwrite customizations
Contacting host: melpa.org:443
Parsing tar file...
Parsing tar file...done
Extracting polymode-20190325.745/
Extracting polymode-20190325.745/polymode-export.el
Extracting polymode-20190325.745/polymode-test-utils.el
Extracting polymode-20190325.745/polymode-debug.el
Extracting polymode-20190325.745/polymode-weave.el
Extracting polymode-20190325.745/polymode-tangle.el
Extracting polymode-20190325.745/polymode-base.el
Extracting polymode-20190325.745/polymode-pkg.el
Extracting polymode-20190325.745/polymode.el
Extracting polymode-20190325.745/polymode-classes.el
Extracting polymode-20190325.745/polymode-methods.el
Extracting polymode-20190325.745/poly-lock.el
Extracting polymode-20190325.745/polymode-core.el
Extracting polymode-20190325.745/polymode-compat.el
Generating autoloads for poly-lock.el...
Generating autoloads for poly-lock.el...done
Generating autoloads for polymode-base.el...
Generating autoloads for polymode-base.el...done
Generating autoloads for polymode-classes.el...
Generating autoloads for polymode-classes.el...done
Generating autoloads for polymode-compat.el...
Generating autoloads for polymode-compat.el...done
Generating autoloads for polymode-core.el...
Not registering prefix "pm" from polymode-core.  Affects: ("pm/polymode" "pm/chunkmode" "pm/current" "pm/type" "pm-object-name" "pm-extra-span-info" "pm-base-buffer" "pm-true-span-type" "pm-cache-span" "pm-initialization-in-progress" "pm-innermost-span" "pm-innermost-range" "pm-format-span" "pm-flush-span-cache" "pm-fun-matcher" "pm-span-buffer" "pm-span-mode" "pm-span-to-range" "pm-same-indent-tail-matcher" "pm-select-buffer" "pm-set-buffer" "pm-switch-to-buffer" "pm-make-text-property-matcher" "pm-map-over-spans" "pm-map-over-modes" "pm-narrow-to-span" "pm-with-narrowed-to-span" "pm-allow-after-change-hook" "pm-allow-post-command-hook" "pm-around-advice" "pm-goto-span-of-type" "pm-get-mode-symbol-from-name" "pm--emacs>26" "pm--export-spec" "pm--indent-region-function-original" "pm--indent-line-function-original" "pm--input-buffer" "pm--input-file" "pm--input-not-real" "pm--intersect-spans" "pm--innermost-span" "pm--killed" "pm--display-file" "pm--get-property-nearby" "pm--get-existing-mode" "pm--get-innermode-mode" "pm--abrev-names" "pm--uncomment-region" "pm--chop-span" "pm--cached-span" "pm--call-syntax-propertize-original" "pm--collect-parent-slots" "pm--comment-region" "pm--completing-read" "pm--wrap-callback" "pm--find-tail-from-head" "pm--fill-forward-paragraph-original" "pm--file-mod-time" "pm--reset-ppss-cache" "pm--run-derived-mode-hooks" "pm--run-init-hooks" "pm--run-hooks" "pm--run-shell-command" "pm--move-overlays" "pm--move-vars" "pm--move-minor-modes" "pm--make-shell-command-sentinel" "pm--make-selector" "pm--matched-selectors" "pm--span-at-point" "pm--symbol-name" "pm--syntax-propertize-function-original" "pm--synchronize-points" "pm--set-transient-map" "pm--select-existing-buffer-visibly" "pm--selector" "pm--selector-match" "pm--selectors" "pm--oref-with-parents" "pm--oref-value" "pm--output-file" "pm--output-not-real" "pm--output-command.file" "pm--prop-put" "pm--prop-get" "pm--process-buffer" "pm--process-internal")
Generating autoloads for polymode-core.el...done
Generating autoloads for polymode-debug.el...
Generating autoloads for polymode-debug.el...done
Generating autoloads for polymode-export.el...
Generating autoloads for polymode-export.el...done
Generating autoloads for polymode-methods.el...
Generating autoloads for polymode-methods.el...done
Generating autoloads for polymode-pkg.el...
Generating autoloads for polymode-pkg.el...done
Generating autoloads for polymode-tangle.el...
Generating autoloads for polymode-tangle.el...done
Generating autoloads for polymode-test-utils.el...
Generating autoloads for polymode-test-utils.el...done
Generating autoloads for polymode-weave.el...
Generating autoloads for polymode-weave.el...done
Generating autoloads for polymode.el...
Generating autoloads for polymode.el...done
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-autoloads.el
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-autoloads.el
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/poly-lock.el...
polymode-classes.el: ‘eieio-object-name-string’ is an obsolete generic function (as of 25.1); use ‘eieio-named’ instead.
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-autoloads.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-base.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-classes.el...
../../../targets/melpa.el: ‘eieio-object-name-string’ is an obsolete generic function (as of 25.1); use ‘eieio-named’ instead.
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-compat.el...

In end of data:
polymode-compat.el:340:1:Warning: the function ‘assoc-delete-all’ is not known
    to be defined.
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-core.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-debug.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-export.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-methods.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-pkg.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-tangle.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-test-utils.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode-weave.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/polymode-20190325.745/polymode.el...

In polymode-next-chunk-same-type:
polymode.el:150:33:Warning: ‘eieio-object-name-string’ is an obsolete function
    (as of 25.1); use ‘eieio-named’ instead.
polymode.el:156:37:Warning: ‘eieio-object-name-string’ is an obsolete function
    (as of 25.1); use ‘eieio-named’ instead.
Done (Total of 12 files compiled, 2 skipped)
Setting ‘package-selected-packages’ temporarily since "emacs -q" would overwrite customizations
Contacting host: melpa.org:443
Generating autoloads for markdown-mode.el...
Generating autoloads for markdown-mode.el...done
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/markdown-mode-20190305.319/markdown-mode-autoloads.el
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/markdown-mode-20190305.319/markdown-mode-autoloads.el
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/markdown-mode-20190305.319...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/markdown-mode-20190305.319/markdown-mode-autoloads.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/markdown-mode-20190305.319/markdown-mode-pkg.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/markdown-mode-20190305.319/markdown-mode.el...
Done (Total of 1 file compiled, 2 skipped)
Contacting host: melpa.org:443
Generating autoloads for poly-markdown.el...
Generating autoloads for poly-markdown.el...done
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-markdown-20190317.1352/poly-markdown-autoloads.el
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-markdown-20190317.1352/poly-markdown-autoloads.el
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-markdown-20190317.1352...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-markdown-20190317.1352/poly-markdown-autoloads.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-markdown-20190317.1352/poly-markdown-pkg.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-markdown-20190317.1352/poly-markdown.el...
Done (Total of 1 file compiled, 2 skipped)
Setting ‘package-selected-packages’ temporarily since "emacs -q" would overwrite customizations
Generating autoloads for poly-noweb.el...
Generating autoloads for poly-noweb.el...done
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-noweb-20190317.1352/poly-noweb-autoloads.el
Wrote /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-noweb-20190317.1352/poly-noweb-autoloads.el
Checking /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-noweb-20190317.1352...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-noweb-20190317.1352/poly-noweb-autoloads.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-noweb-20190317.1352/poly-noweb-pkg.el...
Compiling /Users/sly/.emacs.d/site-lisp/modes/poly-R/.ELPA/26.1/poly-noweb-20190317.1352/poly-noweb.el...

In poly-noweb-electric-<:
poly-noweb.el:128:15:Warning: looking-back called with 1 argument, but
    requires 2-3
Done (Total of 1 file compiled, 2 skipped)
INSTALLED DEPS: ess:(20190330 1523) polymode:(20190325 745) poly-markdown:(20190317 1352) poly-noweb:(20190317 1352)
(sly@montalcino):~/.emacs.d/site-lisp/modes/poly-R$ make
EMACS VERSION: 26.1
GIT HEAD: 3d90219
rm -f poly-R.elc
******************* BUILDING poly-R *************************
emacs -Q -L . -L modes -L tests -L .ELPA/26.1 --batch --load targets/melpa-init.el --funcall batch-byte-compile *.el

In toplevel form:
poly-R.el:214:46:Warning: reference to free variable
    ‘poly-markdown+r-mode-map’

In end of data:
poly-R.el:708:1:Warning: the function ‘poly-r-help-examples-mode’ is not known
    to be defined.
******************* CHECKDOC poly-R *************************
emacs -Q -L . -L modes -L tests -L .ELPA/26.1 --batch --load targets/checkdoc.el
******************* Testing poly-R ***************************
emacs -Q -L . -L modes -L tests -L .ELPA/26.1 --batch --load targets/melpa-init.el --load targets/test.el
Loading /Users/sly/.emacs.d/site-lisp/modes/poly-R/tests/poly-R-tests.el (source)...
Eager macro-expansion failure: (error "No file with name ’minimal.Rmd’ found in ’~/.emacs.d/site-lisp/modes/poly-R/’")
Eager macro-expansion failure: (error "No file with name ’minimal.Rmd’ found in ’~/.emacs.d/site-lisp/modes/poly-R/’")
No file with name ’minimal.Rmd’ found in ’~/.emacs.d/site-lisp/modes/poly-R/’
make: *** [test] Error 255
(sly@montalcino):~/.emacs.d/site-lisp/modes/poly-R$ 

[vspinu]

This is extremely weird. Do you actually have the tests/input/minimal.Rmd in the tree?

What does (expand-file-name "./tests/input/minimal.Rmd" default-directory) from poly-R.el give you?

Calling (pm-test-get-file "minimal.Rmd") from anywhere in the poly-R repo should get the file. Would you mind trying that out manualy after make start? Maybe you could debug that simple function and see what's going on.

[slyrus]

And now I'm seeing this on my linux (ubuntu 18.10) box as well. argh... Perhaps I'm doing something wrong with the organization of my git repos.

The expansion you mentioned above gives:

(expand-file-name "./tests/input/minimal.Rmd" default-directory)
"/home/sly/.emacs.d/site-lisp/modes/poly-R/tests/input/minimal.Rmd"

Calling pm-test-get-file says:

Debugger entered--Lisp error: (error "No file with name ’minimal.Rmd’ found in ’~/.emacs...")
  signal(error ("No file with name ’minimal.Rmd’ found in ’~/.emacs..."))
  error("No file with name '%s' found in '%s'" "minimal.Rmd" "~/.emacs.d/site-lisp/modes/poly-R/")
  pm-test-get-file("minimal.Rmd")
  eval((pm-test-get-file "minimal.Rmd") nil)
  elisp--eval-last-sexp(t)
  eval-last-sexp(t)
  eval-print-last-sexp(nil)
  funcall-interactively(eval-print-last-sexp nil)
  call-interactively(eval-print-last-sexp record nil)
  command-execute(eval-print-last-sexp record)
  execute-extended-command(nil "eval-print-last-sexp" "eval-pri")
  funcall-interactively(execute-extended-command nil "eval-print-last-sexp" "eval-pri")
  call-interactively(execute-extended-command nil nil)
  command-execute(execute-extended-command)

[slyrus]

Now that I look closer, minimal.Rmd isn't actually in the tree. Does it get created dynamically?

[slyrus]

Commenting out the poly-r/after-change-extention test (and applying the EMACSBATCH change in the issue I filed in polymode/polymode) allows things to work properly again.

[vspinu]

Arh. I am an idiot. I forgot to add that file to git tree :( Sometimes it's hard to figure out the obvious. Sorry about the trouble.