pombertlab Goto Github PK
Name: Pombert Lab
Type: Organization
Bio: Pombert lab @ IIT
Location: Illinois Institute of Technology
Pombert Lab's Projects
3dfi
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
a2a
The A2A pipeline guides users from genome assembly to annotations.
a2gb
A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.
alphafold
Fork from AlphaFold to ensure compatibility with 3DFI
id16s
This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.
misc
Miscellaneous scripts
mmh
A simple pipeline to create and search HMM models against reference protein databases.
old
Contains old miscellaneous scripts for genomics. No longer maintained.
publication_scripts
This repository contains scripts from published or submitted manuscripts.
quego
The QueGO pipeline identifies potential homologs to proteins related to specific functionality.
ssrg
The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.
syny
The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
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