Comments (4)
Hi,
Thanks for your interest in popstats! Yes you need to put all the four
populations in a single tped and tfam file.
Best,
Pontus
On Wed, Dec 9, 2015 at 12:07 PM, guzhongru [email protected] wrote:
Hi, I am not clear about the input files. For example, I have Pop1, Pop2,
Pop3 and Outgroup. I want to calculate D-statistics (Pop1 , Pop2 ; Pop3 ,
Outgroup). Do i need to put these four populations in one tped file? or in
4 tped files ? Thanks.—
Reply to this email directly or view it on GitHub
#1.
from popstats.
Hi,Pontus, please can you send me a example of input files ? I don’t know whether my results getting from popstats is right or not. Thanks.
Best,
Zhongru
On 10 Dec 2015, at 16:34, pontussk [email protected] wrote:
Hi,
Thanks for your interest in popstats! Yes you need to put all the four
populations in a single tped and tfam file.Best,
PontusOn Wed, Dec 9, 2015 at 12:07 PM, guzhongru [email protected] wrote:
Hi, I am not clear about the input files. For example, I have Pop1, Pop2,
Pop3 and Outgroup. I want to calculate D-statistics (Pop1 , Pop2 ; Pop3 ,
Outgroup). Do i need to put these four populations in one tped file? or in
4 tped files ? Thanks.—
Reply to this email directly or view it on GitHub
#1.—
Reply to this email directly or view it on GitHub #1 (comment).
from popstats.
Hi Zhongru,
You should be able to find an example here:
http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#tr
Pontus
On Thu, Dec 10, 2015 at 7:22 PM, guzhongru [email protected] wrote:
Hi,Pontus, please can you send me a example of input files ? I don’t know
whether my results getting from popstats is right or not. Thanks.Best,
ZhongruOn 10 Dec 2015, at 16:34, pontussk [email protected] wrote:
Hi,
Thanks for your interest in popstats! Yes you need to put all the four
populations in a single tped and tfam file.Best,
PontusOn Wed, Dec 9, 2015 at 12:07 PM, guzhongru [email protected]
wrote:Hi, I am not clear about the input files. For example, I have Pop1,
Pop2,
Pop3 and Outgroup. I want to calculate D-statistics (Pop1 , Pop2 ;
Pop3 ,
Outgroup). Do i need to put these four populations in one tped file?
or in
4 tped files ? Thanks.—
Reply to this email directly or view it on GitHub
#1.—
Reply to this email directly or view it on GitHub <
https://github.com/pontussk/popstats/issues/1#issuecomment-163680023>.—
Reply to this email directly or view it on GitHub
#1 (comment).
from popstats.
Dear Pontus,
Thank you for providing us the link for the example input file in the previous comment. However, I have just checked but the link is not working anymore. Would you please share us another link which containing the example input file of this algorithm? Thank you very much!
best regards,
Langgeng
from popstats.
Related Issues (10)
- --pi not an option HOT 3
- Question about 'Dp_main = sum(t_list) / sum(n_list)' HOT 19
- Basic question of input files HOT 1
- f3vanilla requests 4 populations HOT 1
- about h4 HOT 1
- Defining pops in tfam file HOT 1
- DArTseq Data to popstats
- invalid literal for int() with base 10: 'C'
- sample larger than population
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from popstats.