Prashant Kalvapalle's Projects
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
analyzing .fcs2.0/3.0 files with semi-automated gating and plotting
Small ad-hoc scripts. Ex - parsing and plotting data from another paper.
To analyse growth curve (OD) of bacteria grown in 96 well plates on a shaking plate reader - Shamoo Lab
Integral feedback based chemical control networks to stabilize biological networks
Contains CSS, HTML and source files for ISAR website (Indian Students at Rice)
❤️A clean, elegant but advanced blog theme for Hugo 一个简洁、优雅且高效的 Hugo 主题
Modelling integrase based memory in bacterial biosensors
Figures for RAPID paper
Solutions to Homework Assignments of NML 502 Course
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Normalizing fluorescence to OD and plotting plate reader data
My personal blog on matters of science, society and everything in the middle
Repository for Programming Assignment 2 for R Programming on Coursera
Takes excel file output from qPCR (Quantstudio3, ABI) and sample labels. Optionally analyzes standard curves and plots CT, Tms and absolute copies
Modification of Adafruit servo motor files for raspberry pi hat to run two servo motors for driving syringe pump. The pumps were used to produce droplets in a microfluidic device in this example. Codes C/O Shamoo Lab/Rice University. Cloned from " "
Documenting all steps taken and literature for troubleshooting wifi issues in dual boot Ubuntu 20 and Windows 10 Dell XPS 15 9500
Plotting publication quality graphics from excel sheet tabular data