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Prachand's Projects

meffil icon meffil

Efficient algorithms for analyzing DNA methylation data.

megalodon icon megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

minimap2 icon minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

pycometh icon pycometh

DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets

pycoqc icon pycoqc

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

twosamplemr icon twosamplemr

R package for performing 2-sample MR using MR-Base database

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