pradyumnasagar Goto Github PK

2020plus

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

aaron

An R package of functions I use day-to-day in analysing various next-generation sequencing data, in particular whole genome bisulfite sequencing.

airport-web

Web application for airport.bio

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bash-

bash-arg-parse

Simple CLI argument parsing template for a stand alone bash script

bash-oneliner

A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

beautysh

A Bash beautifier for the masses.

bio-scripts

Collection of different Perl scripts for bioinformatics

bioinf_scripts

bioinfo

Helpful scripts for bioinfo analysis,

bioinfomagics

Codes for Bioinfomagics

bioinformatica2019

Bitácoras y archivos

bioinformatics

Trends in Bioinformatics

bioinformatics-problems

My solutions for Bioinformatics related problems from the site "Rosalind" (https://rosalind.info/)

bioinfoutilities

Bioinformatics scripts

biostar-tutorials

Code for biostar tutorials - mostly R and Perl

cancer

clinvar-1

Parsing ClinVar data

cmirclustfinder_v1.0

CmiRClustFinder v1.0: a tool for identification of CNV co-locolized miRNA, miRNA clusers and genes in TCGA cancer cohorts.

community_software_tools_for_ngs

conifer

CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.

currbs

Simple and robust evaluation of enzyme combinations for reduced representation approaches

datasciencecoursera

datasharing

The Leek group guide to data sharing

flowcraft

A Nextflow pipeline assembler for genomics :whale::package:

formattable

Formattable Data Structures

fossp

Manipal

free-programming-books

:books: Freely available programming books