Name: Pradyumna Jayaram
Type: User
Company: Manipal Academy of Higher Education
Bio: PhD Scholar,
Manipal School Of Life Sciences, Manipal
#OpenSourceDeveloper #LifeSciences #ComputationalBiology
Twitter: pradyumnasagar
Location: Manipal
Pradyumna Jayaram's Projects
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
An R package of functions I use day-to-day in analysing various next-generation sequencing data, in particular whole genome bisulfite sequencing.
Web application for airport.bio
A curated list of awesome Bioinformatics libraries and software.
Simple CLI argument parsing template for a stand alone bash script
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
Incubator for useful bioinformatics code, primarily in Python and R
A Bash beautifier for the masses.
Collection of different Perl scripts for bioinformatics
Helpful scripts for bioinfo analysis,
Codes for Bioinfomagics
Bitácoras y archivos
Trends in Bioinformatics
My solutions for Bioinformatics related problems from the site "Rosalind" (https://rosalind.info/)
Bioinformatics scripts
Code for biostar tutorials - mostly R and Perl
Parsing ClinVar data
CmiRClustFinder v1.0: a tool for identification of CNV co-locolized miRNA, miRNA clusers and genes in TCGA cancer cohorts.
CoNIFER (Copy Number Inference From Exome Reads) can discover CNVs from exome read-depth data. See Krumm et al., 2012 (Genome Research) for more information.
Simple and robust evaluation of enzyme combinations for reduced representation approaches
The Leek group guide to data sharing
A Nextflow pipeline assembler for genomics :whale::package:
Formattable Data Structures
Manipal
:books: Freely available programming books