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ruben-arts avatar ruben-arts commented on June 8, 2024 1

I'm not sure how your pixi.toml is configured but it worked on my linux-64 machine.

I did need to also add the bioconda channel:

➜ pixi project channel add bioconda
✔ Added bioconda (https://conda.anaconda.org/bioconda/)

❯ pixi add anndata2ri
✔ Added anndata2ri

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ruben-arts avatar ruben-arts commented on June 8, 2024 1

Yeah I was actually thinking we already had that. I remember discussing it. I'll put it on the board.

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partrita avatar partrita commented on June 8, 2024

This is my pixi.toml file

[project]
name = "learn_pixi"
version = "0.1.0"
description = "Add a short description here"
authors = ["deepthought <[email protected]>"]
channels = ["conda-forge", "bioconda"]
platforms = ["linux-64"]

[tasks]

[dependencies]
anndata2ri = ">=1.3.1,<1.4"
scanpy = ">=1.9.8,<1.10"

[pypi-dependencies]
cowsay = "*"

I'm not sure how your pixi.toml is configured but it worked on my linux-64 machine.

I did need to also add the bioconda channel:

➜ pixi project channel add bioconda
✔ Added bioconda (https://conda.anaconda.org/bioconda/)

❯ pixi add anndata2ri
✔ Added anndata2ri

@ruben-arts, Thank you. Since I'm so used to conda commands, I just figured I'd need to use the add command, my bad for not diving deep into the official docs.

Also, got another question. If I wanna install a specific version of a package from a certain channel, does pixi have a command for that? Like, can I do something along the lines of pixi add -c channel_name package_name?

from pixi.

partrita avatar partrita commented on June 8, 2024

Yeah I was actually thinking we already had that. I remember discussing it. I'll put it on the board.

Thanks for the quick response. I hope a solution comes up soon. Have a great day!

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