Comments (8)
no, this is the wrong discussion, raw data should go in data-raw
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sorry, no, probably better to put it in extdata http://r-pkgs.had.co.nz/data.html#data-extdata, I have to try this.
data-raw is also possible, but then we would probably have to build the vignette by hand and move it, as we do in https://github.com/COST-FP1304-PROFOUND/ProfoundData/tree/master/ProfoundData/data-raw
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Yes, I think this works best, see also https://stackoverflow.com/questions/13463103/inst-and-extdata-folders-in-r-packaging?noredirect=1&lq=1
I can do this, but will wait for what you say about the vignette.
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Please give it a shot. I am at the very start of the vignettes and having a robust order now will help a lot. I like this: https://stackoverflow.com/questions/13463103/inst-and-extdata-folders-in-r-packaging?noredirect=1&lq=1
Wecan call fpath <- system.file("extdata", "my_raw_data.csv", package="my_package") on the vignette! Go ahead and I will pull when you are ready.
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Florian, I changed the file to the order on the forums that you pointed out. But now compiling vignette introduction is crashing. can you have a look at how I am calling the functions. Precisely at line 98 is the first error reading the config file. I tried to use the line that gets the absolute path within the package:
datapath <- system.file("extdata", "EXPERIMENT_X", package="gen3sis")
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I'll have a look in the next days, swamped at the moment, sorry!
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No worries. Thanks a lot!
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I think I found a work around! Vignette works as intended. Thus closing the issue. Thank you
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Related Issues (20)
- plot_summary fails if simulation ends before reaching step 0
- axis label for time series in summary plot is wrong
- specificy alternatives on plot_summary documentaiton regarding the sgen3sis.rds
- starting richness plots and range plots(pdfs) are not the same as when called for the first timestep in the call_observer function.
- multiple richenss plot with tag -1 when simulation starts with multiple species
- introduction vignette, richness plot
- versions history HOT 1
- Color palett of the ouput for color-blind people HOT 2
- misplaced loop_ecology() call HOT 1
- implement CI HOT 16
- South America distances missing HOT 4
- build package NOTE
- vignette problems in CRAN Should be corrected by 2021-10-19 to safely retain gen3sis on CRAN. HOT 1
- add colaborations file to git
- CRAN Fixes gen3sis 1.4 HOT 1
- add new check functions? HOT 1
- potential improvement of distance matrix calculation HOT 3
- NEWS version history HOT 1
- Check package for dependencies expiring soon. HOT 3
- accounting problem for speciation followed by extinction HOT 6
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