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Paul Wighton's Projects

bart-docker icon bart-docker

A docker container for the BART Toolbox for Computational MRI and jupyter with related python packages

batchtools icon batchtools

Command line tool to process subjects with re:THINQ using AWS Batch

bids-converter icon bids-converter

helps you convert your PET data! raw PET scanner files (e.g. ecat, dicom) and additional side file like .e.g excel sheets

bids-starter-kit icon bids-starter-kit

Collection of tutorials, wikis, and templates to get you started with creating BIDS compliant datasets

bids-tools icon bids-tools

A collection of tools for creating BIDS datasets in one container

cd4ml-scenarios icon cd4ml-scenarios

Repository with sample code and instructions for "Continuous Intelligence" and "Continuous Delivery for Machine Learning: CD4ML" workshops

cfn-gitlab icon cfn-gitlab

Use AWS CloudFormation to deploy GitLab onto STIG-hardened EL7 Amazon instances

cstore-relay icon cstore-relay

Simply relay for DICOM C-STORE commands in a docker container

dcm-anon icon dcm-anon

Dicom anonymizer that plays nicely with: 1) THINQ/reTHINQ, 2) AutoRegister, 3) FreeSurfer

dcmqi icon dcmqi

Library to support the use of DICOM standard for quantitative imaging research applications.

docker-opengl icon docker-opengl

A docker image that supports rendering graphical applications.

fouse icon fouse

Fouses, scaces and headless bodies

freesurfer icon freesurfer

The official Freesurfer repository maintained by LCN

fs-cwl icon fs-cwl

Common workflow language wrappers and workflow for FreeSurfer

fs-text icon fs-text

Foreked from https://github.com/periodicpoint/arabica

fsm2bids icon fsm2bids

Notes and related files for converting the FreeSurfer maintenance dataset (fsm) to BIDS format

gitlab-cfn icon gitlab-cfn

Fork of https://gitlab.com/techmaniack/gitlab-cfn

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