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ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

basic-illumination

ImageJ BaSiC shading correction for use with Ashlar

bioconda-recipes

Conda recipes for the bioconda channel.

cellpose

a generalist algorithm for cellular segmentation

galaxy

Data intensive science for everyone.

galaxy-ml

Make machine learning simpler with Galaxy

galaxytools

:microscope::books: Galaxy Tool wrappers

gxadmin

Handy command line utility for Galaxy administrators :rocket:

imagej

:sparkler: Open scientific N-dimensional image processing :microscope:

imagej1

Wayne Rasband's ImageJ 1.x repository, updated once a night. To develop this code, use https://github.com/imagej/ImageJA.

infrastructure-playbook

Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/

keras

Deep Learning for humans

linux

Linux kernel source tree

mlxtend

A library of extension and helper modules for Python's data analysis and machine learning libraries.

naivestates

Inference of cell states using Naive Bayes

quantification

Quantification module for mcmicro

s3segmenter

scifio

SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.

scikit-learn

scikit-learn: machine learning in Python

scikit-optimize

Sequential model-based optimization with a `scipy.optimize` interface

sheepdog

Distributed Storage System for QEMU

sklearn

spdk

Storage Performance Development Kit

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

tools-mti

training-material

A collection of Galaxy-related training material

unmicst

UNet script, model, sample data

usegalaxy-eu-tools

List of tools included in https://usegalaxy.eu

usegalaxy-tools

usegalaxy.* common tools