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abc-enhancer-gene-prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

aeron

Alignment, quantification and fusion prediction from long RNA reads

antspy

Advanced Normalization Tools in Python

atac-seq-pipeline

ENCODE ATAC-seq pipeline

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

batchgenerators

A framework for data augmentation for 2D and 3D image classification and segmentation

bioconda-recipes

Conda recipes for the bioconda channel.

butler

Butler is a framework for running scientific workflows on public and academic clouds.

caper

Cromwell/WDL wrapper for Python

cds-dalmatian

dalmatian is a collection of high-level companion functions for Firecloud and FISS.

cds-ensemble

cds-genepy

Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

chirho

An experimental language for causal reasoning

coloncancer

for processing tcga data

comprehensive-rust

This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust to everyone.

cosmic

cosmic category to genomic format

ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

d2genes

datasets to genes

d2l-zh

《动手学深度学习》

datasciencecoursera

datasharing

The Leek group guide to data sharing

ddhodge

Modeling Latent Flow Structure using Hodge Decomposition

depmap_omics

What you need to process the Quarterly DepMap-Omics releases from Terra

dowhy

DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

elpy

Emacs Python Development Environment

example-get-started

Get started DVC project

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

flair-fusion

gcap

DNase I seq QC pipeline