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ants_tumour_analysis

wrappers for using ANTs with tumour data

app-conn-preprocessing

fMRI preprocessing via CONN

bids_fmri_scripts

CPP Analysis scripts for fMRI datasets prepared in BIDS format

dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

denoiser

Nuisance removal tool for fMRI data

dicomsort

DICOM sorting utility

easy_lausanne

Easy creation of Lausanne2008 atlases

fastsurfer

PyTorch implementation of FastSurferCNN

fsl_sub

parallel FSL processing without requiring SGE

hcp-analysis

Scripts to automate processing of HCP data

kul_nis

KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.

liquidctl

Cross-platform CLI and Python drivers for AIO liquid coolers and other devices

malpem

MALPEM whole-brain segmentation framework

mritoolkit

mtle-hs-new

specifically for simple DTI of HS data

mtle_hs-script

Carries out T1 and DTI preproc and analysis with ANTs and MRTRIX3

multiscalebrainparcellator

Multi-Scale Brain Parcellator, part of the Connectome Mapping Toolkit (CMTK), is a BIDS App that implements a full anatomical MRI processing pipeline, from raw T1w data to structural brain parcellation at five different scales.

niimath

niimath - a clone of fslmaths

nspn_code

Code written for the NSPN project

python_intro

A short introduction into Python

scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

shard-recon

MRtrix3 module for motion correction and scattered slice reconstruction in multi-shell diffusion MRI.

split_3d_atlas_2_4d

Small Matlab script to split up a 3D image of labels to 4D

synb0-disco

test-git

testing

ttoz

Convert T score brain statistical map to Z score map

vtk-obj

From VTK to OBJ wavefront converter