Comments (5)
After running 'configure', did you run 'make' before trying to run 'make check'?
'make check' should maybe automatically run 'make' if bin/R doesn't exists, but it doesn't at the moment.
from pqr.
When I run make
I get an error
make[4]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/src/library/compiler'
make[4]: Entering directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/src/library/compiler'
Error in readRDS(pfile) :
cannot read workspace version 3 written by R 4.0.3; need R 3.5.0 or newer
Calls: <Anonymous> ... findpack -> find.package -> lapply -> FUN -> readRDS
Execution halted
make[4]: *** [../../../../pqR-2020-07-23/share/make/basepkg.mk:120: mklazy] Error 1
make[4]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/src/library/compiler'
make[3]: *** [Makefile:27: all] Error 2
make[3]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/src/library/compiler'
make[2]: *** [Makefile:35: R] Error 1
make[2]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/src/library'
make[1]: *** [Makefile:28: R] Error 1
make[1]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/src'
make: *** [Makefile:59: R] Error 1
Knowing that make checks
won't work given that make failed, here's the output anyway,
spinkney@ip-1XX:~/pqr_source/pqr-2020-07-23-myconfig$ make check
make[1]: Entering directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
make[2]: Entering directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
make[3]: Entering directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests/Examples'
WARNING: ignoring environment value of R_HOME
During startup - Warning messages:
1: package "methods" in options("defaultPackages") was not found
2: package ‘datasets’ in options("defaultPackages") was not found
3: package ‘utils’ in options("defaultPackages") was not found
4: package ‘grDevices’ in options("defaultPackages") was not found
5: package ‘graphics’ in options("defaultPackages") was not found
6: package ‘stats’ in options("defaultPackages") was not found
7: package ‘methods’ in options("defaultPackages") was not found
Testing examples for package ‘base’
no parsed files found
Warning: no examples found for package ‘base’
Testing examples for package ‘tools’
no parsed files found
Warning: no examples found for package ‘tools’
Testing examples for package ‘utils’
no parsed files found
Warning: no examples found for package ‘utils’
Testing examples for package ‘grDevices’
no parsed files found
Warning: no examples found for package ‘grDevices’
Testing examples for package ‘graphics’
no parsed files found
Warning: no examples found for package ‘graphics’
Testing examples for package ‘stats’
no parsed files found
Warning: no examples found for package ‘stats’
Testing examples for package ‘datasets’
no parsed files found
Warning: no examples found for package ‘datasets’
Testing examples for package ‘methods’
no parsed files found
Warning: no examples found for package ‘methods’
Testing examples for package ‘grid’
no parsed files found
Warning: no examples found for package ‘grid’
Testing examples for package ‘splines’
no parsed files found
Warning: no examples found for package ‘splines’
Testing examples for package ‘stats4’
no parsed files found
Warning: no examples found for package ‘stats4’
Testing examples for package ‘tcltk’
no parsed files found
Warning: no examples found for package ‘tcltk’
Testing examples for package ‘compiler’
no parsed files found
Warning: no examples found for package ‘compiler’
Testing examples for package ‘parallel’
no parsed files found
Warning: no examples found for package ‘parallel’
make[3]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests/Examples'
make[2]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
make[2]: Entering directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
running strict specific tests
make[3]: Entering directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
running code in '../../pqR-2020-07-23/tests/eval-etc.R' ...make[3]: *** [../../pqR-2020-07-23/tests/Makefile.common:103: eval-etc.Rout] Error 1
make[3]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
make[2]: *** [../../pqR-2020-07-23/tests/Makefile.common:183: test-Specific] Error 2
make[2]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
make[1]: *** [../../pqR-2020-07-23/tests/Makefile.common:165: test-all-basics] Error 1
make[1]: Leaving directory '/home/spinkney/pqr_source/pqr-2020-07-23-myconfig/tests'
make: *** [Makefile:217: check] Error 2
from pqr.
It looks like something in your environment is causing pqR to try to read a workspace that you wrote with a recent version of R-core R. You could look at the shell environment with the 'set' command, then unset ones that start with "R" using 'unset'. (This assumes you're using 'bash' as your shell.)
from pqr.
Thank you, I will have to test once I can unset R since I'm running on a server that other users use.
from pqr.
It shouldn't matter that you're on a shared machine, since the environment for your shell is local to you.
from pqr.
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from pqr.