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adna

Utilities for working with ancient DNA.

allometry_data

OCR PDFs of old allometry data

atram

atram_singularity

big_bee

Utilities in support of the Big Bee project

boyd-bird-journal

Extract data from pictures of handwritten field observations

colonialism_capacity_bias

Code in support of the "Colonialism and Capacity-Bias" paper

common_utils

Utilities used in several repositories

digi-leap

Extract information from labels on herbarium sheets

digi_leap_old

Extract information from images of herbarium specimens

digi_leap_server

digileap.jl

Extract information from labels on herbarium specimen sheets

dot_configs

Transfer my configs

ectoparasites

Utilites and database supporting ectoparasite research

floratraiter

Parsers (rule-based) for information extraction of traits from plant treatments

gazetteer

herbarium_phenology

Extract phenological data from digitized herbarium specimens

label-babel

Find and classify labels on images of museum specimins

label_finder

Use a neural network to find labels on images of herbarium sheets

label_reconciliations

Code for reconciling multiple transcriptions for a label

labeltraiter

Extract traits from OCRed text of herbarium labels

lidar

A Python package for delineating nested surface depressions from digital elevation data.

line-align

Multiple sequence alignment on lines of text

lit-mining-occurrencedb

mosquito

Support for research on mosquitos

nitfix

Phylogenomic discovery and engineering of nitrogen fixation into the bioenergy woody crop poplar

notes-from-nature-landing

Notes from Nature Landing

ocr_ensemble

OCR herbarium labels with an ensemble of image processing and OCR engines

pdf_parsers

Utilities for parsing PDFs for information extraction

phenobase

Classifiers for the Phenobase project