Name: Vivek Rai
Type: User
Bio: learning biology through code
Twitter: raivivek_
Blog: https://raivivek.in
I am interested in understanding the structure of genome and its organization. How is the information encoded in genome and epigenome? What happens when the order of events is disrupted and why does it lead to a disease? These are some of the questions that I attempt to answer by drawing from integrated experimental, quantitative, and computational approaches.
Read more on my blog Shorts.
10x-scatac-2019
Code Repository for Satpathy Granja et al 2019
2015_internship-notes
A day to day log of my research intern
2015_qsb-notes
Daily log, resources and collection of other notes during QSB 2015 Winter School
adventofcode2k18
adventofcode2k20
My solutions to Advent of Code 2020 challenges.
afra
Genome Annotation for the Masses
an-introduction-to-applied-bioinformatics
Interactive lessons in bioinformatics.
are_you_still_using_elbow_method
ataqv
A toolkit for QC and visualization of ATAC-seq results.
awesome-bioinformatics
2018 Recommended Papers to Read in Bioinformatics as Voted by Bioinformaticians
awesome-biology
Curated (meta)list of resources for Biology.
awesome-courses
:books: List of awesome university courses for learning Computer Science!
awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
awesome-public-datasets
An awesome list of high-quality open datasets in public domains (on-going).
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
badas_nextflow_tutorial
Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology
basclu
Reimplementation of BasClu algorithm by Liu et al (2019)
bio-images
Singularity definition files for various bioinformatics tasks
biobelt
my daily drivers
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
bioinf529-winter2019
Bioinformatics 529 - Bioinformatics Concepts and Algorithms
bioinf545_w18
bioinformatics-cafe
Unsorted scripts for bioinformatics
bioinformatics-tools
Awk, bash, python scripts for processing NGS data
biotools
A list of useful bioinformatics resources
chromvarmotifs
R package with motifs for use with chromVAR
convert-this-to-that
Quickly lookup how to convert common bioinformatics file formats
cookiecutter-reproducible-research
cookiecutter-snakemake
Snakemake pipeline using cookiecutter
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
