rajaldebnath Goto Github PK

16s

Notes and scripts for 16S microbiome analysis

16s-rdna-v3-v4

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

2016-01-18-msu

Course Page for 1 day Data Carpentry @ MSU

2017-ncbi-taxdump

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

amphora2

An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.

ancom

R scripts for Analysis of Composition of Microbiomes (ANCOM).

animate.phyloseq

Animation addon tool for phyloseq package

annovarr

annovarR: a variant annotation and visualization system based on R and Shiny framework

anvio

An analysis and visualization platform for 'omics data

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

appliedgenomics2018

Materials for Spring 2018 Applied Genomics Course

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-public-datasets

An awesome list of high-quality open datasets in public domains (on-going). By everyone, for everyone!

bac-genomics-scripts

Collection of scripts for bacterial genomics

bacterial_gwas_tutorial

Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

bash-oneliner

A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bedtools2

A powerful toolset for genome arithmetic.

binf_toolkit

Handy scripts for routine bioinformatic analysis

binsanity

Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

bio-py

Some useful python scripts for biologists

bioicons

A library of free open source icons for science illustrations in biology and chemistry

biom

Development version of the biom package for R

biomagician

Useful tools in microbiomics and metagenomics

bioscripts

some useful scripts for working with genomics and sequencing data

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

brig

BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.

brocode

self made scripts